Alignment last updated: 11/20/2008 16:56:51

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AL627343.16 and AL928666.7

Download Genome Workbench

Swap Rows Rotate Orientations

AL627343.16 Mouse DNA sequence from clone RP23-382J14 on chromosome 11, complete sequence [htgs_phase3]

Length: 121,496 bp

AL928666.7 Mouse DNA sequence from clone RP23-216G14 on chromosome 11, complete sequence [htgs_phase3]

Length: 91,110 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 1105
Total Length: 2000
Aligned Length: 2000
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	121496	2001	+	+	chenhc	Taxid 10090 chrom 11 Primary assembly	2008-11-20 16:56:51.113	63649	1105	GRCm39, GRCm38, MGSCv37

Alignment 1 of 1

 AL627343.16 : + : 119497..121496
 AL928666.7 : + : 1..2000
 Mismatches = 0, Gaps = 0, Length = 2000
 Percent identity = 100%
 Score = 3965 bits (2000), Expect = 0
  2 BAC and 4 Fosmid bridging clones.
  2 BAC and 4 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL627343.16 >119497  aaggtcagagctatagtgtgggcctcactcctctggagctcaggcctcaccagaactggt 119556 
AL928666.7  >1       ............................................................ 60     

AL627343.16 >119557  tattgaggaagaaccagaaaattcaaatggggaagggcaacatctttcaatggacatgtc 119616 
AL928666.7  >61      ............................................................ 120    

AL627343.16 >119617  acccttctagtgtttgcaccagcttggactcagcctagaatgagaccttgtcccatgatt 119676 
AL928666.7  >121     ............................................................ 180    

AL627343.16 >119677  ccagtatgaagtcccatctctccctctaaggacatgctgttcagtagccagtagtcacac 119736 
AL928666.7  >181     ............................................................ 240    

AL627343.16 >119737  atggctattataatttcaataagtttaattaatggcgttcacactagctaatttcccatg 119796 
AL928666.7  >241     ............................................................ 300    

AL627343.16 >119797  agcaatggccatctacctgtagctattagccaccagatgaaccagccaggatttgagtcc 119856 
AL928666.7  >301     ............................................................ 360    

AL627343.16 >119857  tttccatctttgtagaaaagtataggaggttttgcgttgcttgagagtgtctcctctcca 119916 
AL928666.7  >361     ............................................................ 420    

AL627343.16 >119917  gtgaacactcactctttcctaggaggtgtgtgtgtgtgtgagggggggagtaagcaagtg 119976 
AL928666.7  >421     ............................................................ 480    

AL627343.16 >119977  atcacaagctctggatatctgggggtcatctgctcagaaagagttaggaagaggcagttc 120036 
AL928666.7  >481     ............................................................ 540    

AL627343.16 >120037  tccctgggctgtccccagtttctgtcatatgccatgcctctactggcttctgttccaact 120096 
AL928666.7  >541     ............................................................ 600    

AL627343.16 >120097  ttcttctgattgaagtcggaataagcaccctgtttttaagtcatctccctgtcctcagaa 120156 
AL928666.7  >601     ............................................................ 660    

AL627343.16 >120157  gaccataagagtctcagatggtgacaaccaacattgatccaatgcttatgctacacacca 120216 
AL928666.7  >661     ............................................................ 720    

AL627343.16 >120217  tatgatcccccccacacacacacacactctagtttgcagagcatagatatataaagaaaa 120276 
AL928666.7  >721     ............................................................ 780    

AL627343.16 >120277  catcaaaaacatacctatttccccccaccagtgagtgaggtgccagtgaccgaacccagc 120336 
AL928666.7  >781     ............................................................ 840    

AL627343.16 >120337  catctgttccagacccagatattagccacagccatgctgtgctgcaggatgtaggataga 120396 
AL928666.7  >841     ............................................................ 900    

AL627343.16 >120397  acatatctcagtatctcaattcgtagccttcccctccagtgggggagaacccacttcact 120456 
AL928666.7  >901     ............................................................ 960    

AL627343.16 >120457  ttttctaaaggaggacttaatgaaggatgtgtgatatggtaaagtgctttgccggcatta 120516 
AL928666.7  >961     ............................................................ 1020   

AL627343.16 >120517  aagccctgccccgatatcagggaccttaatgaaaacactctaatgctgttcttcagatta 120576 
AL928666.7  >1021    ............................................................ 1080   

AL627343.16 >120577  gcgccaggtaaagtgggcaacagaagcatatgcagagtttgtctagtgctaaggtattct 120636 
AL928666.7  >1081    ............................................................ 1140   

AL627343.16 >120637  gactagcgggtcaactacagttcggactaagttcgtggacaggagtccttatgtacaaca 120696 
AL928666.7  >1141    ............................................................ 1200   

AL627343.16 >120697  agcaccatggtccaacaaaggcatgcatagtgcccagctctgaggctggttggtctgtca 120756 
AL928666.7  >1201    ............................................................ 1260   

AL627343.16 >120757  catataagagggctgaaccgaacagaaactaattactaaggagtacctctgcccctcctg 120816 
AL928666.7  >1261    ............................................................ 1320   

AL627343.16 >120817  gcagaggagaaatctcctggttttcttggtaaattcttccagcagattttcaagagcaga 120876 
AL928666.7  >1321    ............................................................ 1380   

AL627343.16 >120877  tactcctcccctggtttgtacagcccagacaagggaattcccctcagtgtgcagtgaggg 120936 
AL928666.7  >1381    ............................................................ 1440   

AL627343.16 >120937  gaattcttcacctagcctatgggtagaaaaggcagcttgcttgccttaccattcagatct 120996 
AL928666.7  >1441    ............................................................ 1500   

AL627343.16 >120997  gactgtgagtccactgggaagaacaagtcactctgttgaatacccccacccccaccccca 121056 
AL928666.7  >1501    ............................................................ 1560   

AL627343.16 >121057  cccccacacacatataccttgactgatcttatgggtaagggtgaggcactcttccatagc 121116 
AL928666.7  >1561    ............................................................ 1620   

AL627343.16 >121117  atggatctggcagctttaaaggaaggcttatactaaattatacttctgcactggtccatc 121176 
AL928666.7  >1621    ............................................................ 1680   

AL627343.16 >121177  catctgccacagggaaagatgctctaatggatggactaagggatgctgttgagaacactc 121236 
AL928666.7  >1681    ............................................................ 1740   

AL627343.16 >121237  catcatgacaccagtgccttgggtcctagatccaggaaaaccaagctactcttgaataag 121296 
AL928666.7  >1741    ............................................................ 1800   

AL627343.16 >121297  cagcactgggttgctgtgcttgcaggcatttgctttggctgttcggatgctcagagccag 121356 
AL928666.7  >1801    ............................................................ 1860   

AL627343.16 >121357  ctctgctatccatctccagcaagaggctaaggaaggcatgtgaactgcatatgctgatcc 121416 
AL928666.7  >1861    ............................................................ 1920   

AL627343.16 >121417  cactgctggattggtgcttaactttaatcttatttgtttgtttttattttactgatcttt 121476 
AL928666.7  >1921    ............................................................ 1980   

AL627343.16 >121477  gaaggtgtgacaaagaattc 121496 
AL928666.7  >1981    .................... 2000

Events

Id	Type	Date	Whodid	Comment
2117	ImportOldDb	09/02/2005 10:34:00	f_old_db
2118	ReSetShortOvlp	09/04/2008 10:31:48	dbo
174406	CreateSwitchPt	11/20/2008 16:56:51	chenhc	tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
C3H-151J1				AL928666.7	100%	pos 58950 (F-)
C3H-218G4	AL627343.16	99.14%	pos 21677 (R+)	AL627343.16	99.26%	pos 119283 (F-)
C3H-233N4				AL928666.7	99.87%	pos 81262 (F-)
CH29-175K12	AL928666.7	99.31%	pos 62638 (R+)
CH29-20G20				AL928666.7	99.86%	pos 6651 (F-)
CH29-39F10	AL928666.7	99.64%	pos 20678 (R+)
CH29-44C11				AL627343.16	99.28%	pos 31134 (F-)
CH29-520P18				AL627343.16	99.52%	pos 27034 (F-)
CH29-566C8				AL928666.7	99.5%	pos 30001 (F+)
CH29-590O11	AL928666.7	99.87%	pos 83403 (R+)
RP24-102I7				AL627343.16	99.4%	pos 77418 (F+)
RP24-190A17	AL928666.7	99.68%	pos 90989 (R-)	AL627343.16	99.61%	pos 51916 (F+)
RP24-231M11				AL928666.7	99.53%	pos 26972 (F+)
RP24-242J16				AL627343.16	99.01%	pos 53897 (F-)
RP24-278G22				AL627343.16	99.07%	pos 23559 (F+)
RP24-281K6				AL928666.7	99.62%	pos 666 (F-)
RP24-281K6				AL627343.16	99.62%	pos 120162 (F-)
RP24-398B8	AL627343.16	99.08%	pos 55710 (R+)	AL928666.7	99.63%	pos 78385 (F-)
RP24-94G24				AL627343.16	99.32%	pos 59811 (F+)
RP24-94G24				AL627343.16	99.4%	pos 59806 (F+)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
WI1-1029J11	AL627343.16	100%	pos 52303 (R+)
WI1-1029J6	AL627343.16	100%	pos 52303 (R+)	AL627343.16	100%	pos 93618 (F-)
WI1-1100K15				AL627343.16	100%	pos 37972 (F-)
WI1-1150D20				AL627343.16	100%	pos 55709 (F+)
WI1-1236M16	AL627343.16	100%	pos 28678 (R-)
WI1-1249N10	AL928666.7	99.49%	pos 45765 (R+)
WI1-1335O13	AL627343.16	99.75%	pos 103176 (R+)	AL928666.7	99.1%	pos 25131 (F-)
WI1-1403O11				AL627343.16	99.83%	pos 17724 (F-)
WI1-1617P17	AL627343.16	100%	pos 38551 (R-)
WI1-1628A18	AL928666.7	100%	pos 57129 (R-)	AL928666.7	100%	pos 17922 (F+)
WI1-170H1				AL627343.16	100%	pos 31858 (F+)
WI1-1734P22				AL928666.7	100%	pos 35663 (F-)
WI1-1743G19				AL928666.7	100%	pos 89950 (F-)
WI1-1852D8	AL627343.16	100%	pos 93464 (R-)	AL627343.16	99.77%	pos 55655 (F+)
WI1-2122G15				AL928666.7	100%	pos 34924 (F+)
WI1-2143C8	AL627343.16	100%	pos 12820 (R+)	AL627343.16	100%	pos 56529 (F-)
WI1-2304G7	AL928666.7	100%	pos 19926 (R-)	AL627343.16	100%	pos 106649 (F+)
WI1-2304O9	AL928666.7	100%	pos 19925 (R-)	AL627343.16	99.42%	pos 106647 (F+)
WI1-2348P16	AL928666.7	99.4%	pos 3482 (R-)	AL627343.16	99.83%	pos 89757 (F+)
WI1-250A12				AL928666.7	100%	pos 61257 (F+)
WI1-2530G17	AL928666.7	100%	pos 44586 (R+)	AL928666.7	100%	pos 83267 (F-)
WI1-2549L13				AL928666.7	99.31%	pos 35717 (F+)
WI1-2601M20				AL627343.16	99.57%	pos 72194 (F+)
WI1-2645F20	AL928666.7	100%	pos 76025 (R-)	AL928666.7	100%	pos 37600 (F+)
WI1-275F24	AL627343.16	100%	pos 110907 (R-)	AL627343.16	100%	pos 70201 (F+)
WI1-2769D4	AL928666.7	99.75%	pos 31121 (R+)	AL928666.7	100%	pos 71321 (F-)
WI1-278J24				AL928666.7	100%	pos 61257 (F+)
WI1-2803J13				AL627343.16	99.74%	pos 8822 (F-)
WI1-2814K9				AL627343.16	99.8%	pos 67416 (F+)
WI1-2906L12	AL627343.16	99.42%	pos 11786 (R+)	AL627343.16	99.31%	pos 51836 (F-)
WI1-292J16	AL627343.16	100%	pos 110913 (R-)	AL627343.16	100%	pos 70202 (F+)
WI1-300L12	AL627343.16	100%	pos 7729 (R-)
WI1-392D7	AL627343.16	100%	pos 108316 (R-)	AL627343.16	100%	pos 69408 (F+)
WI1-408H23	AL627343.16	100%	pos 19223 (R+)	AL627343.16	100%	pos 59098 (F-)
WI1-448B19	AL627343.16	99.27%	pos 41238 (R-)	AL627343.16	99.58%	pos 1509 (F+)
WI1-486P21	AL627343.16	100%	pos 84225 (R-)	AL627343.16	100%	pos 44737 (F+)
WI1-534F3				AL928666.7	100%	pos 63602 (F+)
WI1-725L7				AL627343.16	100%	pos 84882 (F+)
WI1-822J16	AL627343.16	100%	pos 56292 (R-)	AL627343.16	100%	pos 16574 (F+)
WI1-951H8	AL928666.7	99.48%	pos 44585 (R+)	AL928666.7	100%	pos 83268 (F-)
WI1-998A12	AL627343.16	100%	pos 88480 (R-)	AL627343.16	99.52%	pos 49394 (F+)

Repeats

acc	start	stop	repeat id	strand	name	family	class
AL627343.16	6395	6472	13849867	-	RLTR17B_Mm	ERVK	LTR
AL627343.16	6473	6667	13849868	-	B3	B2	SINE
AL627343.16	6677	6750	13849866	-	B4	B4	SINE
AL627343.16	6751	6983	13849869	+	MLT1I	ERVL-MaLR	LTR
AL627343.16	7115	7161	13849870	+	(TTTTA)n
AL627343.16	7162	7329	13849871	-	B3A	B2	SINE
AL627343.16	7809	8006	13849872	-	LTR78	ERV1	LTR
AL627343.16	8246	8438	13849873	-	B3A	B2	SINE
AL627343.16	8626	9091	13849874	+	MLTR14	ERV1	LTR
AL627343.16	9262	9430	13849875	-	Helitron3Na_Mam	Helitron	RC
AL627343.16	9691	9930	13849876	+	(TG)n
AL627343.16	9812	9974	13849877	+	(TATG)n
AL627343.16	10668	11271	13849878	-	LTR106_Mam		LTR
AL627343.16	11471	11555	13849879	+	MTD	ERVL-MaLR	LTR
AL627343.16	13035	13065	13849880	+	(CAAA)n		Simple_repeat
AL627343.16	13068	13208	13849881	-	B1F1	Alu	SINE
AL627343.16	14314	14395	13849882	+	RLTR20A4	ERVK	LTR
AL627343.16	14404	14487	13849883	+	(CGTG)n
AL627343.16	14490	14654	13849884	+	(TG)n
AL627343.16	14668	14826	13849884	+	(TG)n
AL627343.16	14834	14904	13849885	+	(CGTG)n
AL627343.16	15098	15420	13849886	-	MTE2b	ERVL-MaLR	LTR
AL627343.16	15567	15643	13849887	+	C-rich
AL627343.16	15740	15859	13849888	+	MTD	ERVL-MaLR	LTR
AL627343.16	15856	15899	13849888	+	MTD	ERVL-MaLR	LTR
AL627343.16	15900	16422	13849888	+	MTD-int		ERVL-MaLR
AL627343.16	16424	16469	13849889	+	(TG)n
AL627343.16	16490	16565	13849890	+	MIRc	MIR	SINE
AL627343.16	16889	17050	13849891	-	B3A	B2	SINE
AL627343.16	17541	17608	13849892	-	L2	L2	LINE
AL627343.16	18089	18180	13849893	+	PB1D10	Alu	SINE
AL627343.16	18251	18646	13849894	-	MTA_Mm	ERVL-MaLR	LTR
AL627343.16	6213	6394	13849866	-	B4	B4	SINE
AL627343.16	6165	6204	13849865	+	(TG)n
AL627343.16	4865	5175	13849864	+	ORR1G	ERVL-MaLR	LTR
AL627343.16	3504	3989	13849863	-	RLTR11A2	ERVK	LTR
AL627343.16	3276	3381	13849862	-	B4	B4	SINE
AL627343.16	3147	3266	13849861	-	B3	B2	SINE
AL627343.16	2908	3087	13849860	-	B3	B2	SINE
AL627343.16	2688	2894	13849859	-	B4	B4	SINE
AL627343.16	1941	2647	13849858	+	Zaphod	hAT-Tip100	DNA
AL627343.16	1261	1503	13849857	+	Lx5		L1
AL627343.16	1001	1225	13849856	+	(TC)n
AL627343.16	903	999	13849855	-	B4	B4	SINE
AL627343.16	377	462	13849854	-	RMER30	hAT-Charlie	DNA
AL627343.16	177	275	13849853	+	L1MC		L1
AL627343.16	18698	18744	13849895	+	(T)n
AL627343.16	18745	18891	13849896	-	B1_Mus2	Alu	SINE
AL627343.16	18902	18926	13849897	+	AT_rich		Low_complexity
AL627343.16	18937	19042	13849898	+	MARNA	TcMar-Mariner	DNA
AL627343.16	19095	19239	13849899	+	MIRb	MIR	SINE
AL627343.16	19506	19575	13849900	+	IMPB_01		Satellite
AL627343.16	19774	19834	13849901	+	(TAAA)n		Simple_repeat
AL627343.16	21024	21096	13849902	+	MIRb	MIR	SINE
AL627343.16	21909	22198	13849903	-	L1MD		L1
AL627343.16	22239	22291	13849904	+	L2	L2	LINE
AL627343.16	22703	22817	13849905	+	MIR	MIR	SINE
AL627343.16	22945	23106	13849906	+	Charlie15a	hAT-Charlie	DNA
AL627343.16	23176	23196	13849907	+	AT_rich		Low_complexity
AL627343.16	23513	23619	13849908	+	MIRc	MIR	SINE
AL627343.16	23886	24125	13849909	-	MER33	hAT-Charlie	DNA
AL627343.16	24131	24254	13849910	+	B3A	B2	SINE
AL627343.16	24528	24605	13849911	+	MLT1B	ERVL-MaLR	LTR
AL627343.16	24734	24793	13849911	+	MLT1B	ERVL-MaLR	LTR
AL627343.16	24850	24940	13849912	-	MIRb	MIR	SINE
AL627343.16	25194	25469	13849913	+	B4	B4	SINE
AL627343.16	25492	25626	13849914	+	(CA)n		Simple_repeat
AL627343.16	25692	25824	13849915	+	(CA)n		Simple_repeat
AL627343.16	25944	26067	13849916	-	MIRb	MIR	SINE
AL627343.16	26112	26150	13849917	+	(TG)n
AL627343.16	26170	27251	13849918	+	Arthur1B	hAT-Tip100	DNA
AL627343.16	27448	27470	13849919	+	(CCCCCA)n
AL627343.16	27755	27876	13849920	-	L2b		L2
AL627343.16	27880	28098	13849921	+	MLT1E3	ERVL-MaLR	LTR
AL627343.16	28176	28234	13849922	-	IMPB_01		Satellite
AL627343.16	28235	28281	13849923	+	(GA)n		Simple_repeat
AL627343.16	28339	28441	13849924	+	MLT2B1	ERVL	LTR
AL627343.16	30085	30193	13849925	+	RLTR17B_Mm	ERVK	LTR
AL627343.16	30257	30341	13849926	+	(ATG)n
AL627343.16	30375	30413	13849927	+	(TTTA)n
AL627343.16	30423	30541	13849928	-	ID_B1	B4	SINE
AL627343.16	30426	30556	13849929	-	B1_Mur1	Alu	SINE
AL627343.16	30680	30864	13849930	-	B3A	B2	SINE
AL627343.16	31385	31413	13849931	+	AT_rich		Low_complexity
AL627343.16	31432	31485	13849932	+	(CGTG)n
AL627343.16	31486	31549	13849933	+	(GA)n		Simple_repeat
AL627343.16	31550	31682	13849934	-	B3A	B2	SINE
AL627343.16	32201	32305	13849935	-	L2c		L2
AL627343.16	32864	32926	13849936	+	IMPB_01		Satellite
AL627343.16	34317	34553	13849937	+	L1MA4		L1
AL627343.16	34657	34780	13849938	-	MLT1A0	ERVL-MaLR	LTR
AL627343.16	35024	35291	13849938	-	MLT1A0	ERVL-MaLR	LTR
AL627343.16	36512	36660	13849939	+	RSINE1	B4	SINE
AL627343.16	36830	36904	13849940	-	MIR	MIR	SINE
AL627343.16	37702	37818	13849941	+	B4A	B4	SINE
AL627343.16	37716	37885	13849942	+	B3A	B2	SINE
AL627343.16	37893	37999	13849943	-	MER5A1	hAT-Charlie	DNA
AL627343.16	38954	39012	13849944	+	(TCTA)n
AL627343.16	39644	39739	13849945	+	MIR	MIR	SINE
AL627343.16	39953	40141	13849946	-	MER3	hAT-Charlie	DNA
AL627343.16	40170	40363	13849947	+	URR1A	hAT-Charlie	DNA
AL627343.16	41226	41346	13849948	+	RLTR17B_Mm	ERVK	LTR
AL627343.16	41347	41375	13849949	+	(TG)n
AL627343.16	43390	43578	13849950	-	MER103C	hAT-Charlie	DNA
AL627343.16	43606	43648	13849951	+	(CA)n		Simple_repeat
AL627343.16	43871	44195	13849952	-	MER58B	hAT-Charlie	DNA
AL627343.16	44408	44481	13849953	-	RLTR20A4	ERVK	LTR
AL627343.16	44470	44881	13849954	-	MLTR14	ERV1	LTR
AL627343.16	45951	46145	13849955	+	MIR	MIR	SINE
AL627343.16	46589	47427	13849956	-	L1MC1		L1
AL627343.16	47428	47829	13849957	+	MTC	ERVL-MaLR	LTR
AL627343.16	47830	47895	13849956	-	L1MC1		L1
AL627343.16	48078	48198	13849958	+	IMPB_01		Satellite
AL627343.16	48199	48279	13849959	+	RMER17C2	ERVK	LTR
AL627343.16	48533	48746	13849960	+	ID_B1	B4	SINE
AL627343.16	49369	49503	13849961	+	B1_Mur1	Alu	SINE
AL627343.16	50501	50540	13849962	+	(TAGA)n		Simple_repeat
AL627343.16	50816	50939	13849963	-	MIR3	MIR	SINE
AL627343.16	51977	52006	13849964	+	(TTTG)n
AL627343.16	52007	52144	13849965	-	B1_Mm	Alu	SINE
AL627343.16	53578	53613	13849966	+	(TGG)n		Simple_repeat
AL627343.16	55228	55326	13849967	-	MER5B	hAT-Charlie	DNA
AL627343.16	55832	55925	13849968	+	RSINE1	B4	SINE
AL627343.16	57589	57771	13849969	+	MTD	ERVL-MaLR	LTR
AL627343.16	58131	58150	13849970	+	(TG)n
AL627343.16	58151	58315	13849971	-	B3A	B2	SINE
AL627343.16	58337	58661	13849972	+	Charlie5	hAT-Charlie	DNA
AL627343.16	59657	59819	13849973	+	MIRb	MIR	SINE
AL627343.16	60486	60700	13849974	+	(TAGA)n		Simple_repeat
AL627343.16	60894	60919	13849975	+	(TG)n
AL627343.16	63304	63329	13849976	+	AT_rich		Low_complexity
AL627343.16	64630	64773	13849977	-	B3A	B2	SINE
AL627343.16	65379	65423	13849978	+	(TG)n
AL627343.16	65900	66154	13849979	+	B4A	B4	SINE
AL627343.16	66761	66942	13849980	+	URR1B	hAT-Charlie	DNA
AL627343.16	67030	67147	13849981	+	B1F2	Alu	SINE
AL627343.16	67139	67209	13849982	+	B1F	Alu	SINE
AL627343.16	67148	67172	13849983	+	ID_B1	B4	SINE
AL627343.16	67196	67263	13849984	+	B1F	Alu	SINE
AL627343.16	67277	67529	13849985	+	B4	B4	SINE
AL627343.16	67725	67766	13849986	+	T-rich
AL627343.16	67767	67913	13849987	-	B1_Mus1	Alu	SINE
AL627343.16	67914	67930	13849988	+	T-rich
AL627343.16	68688	68747	13849989	+	(TG)n
AL627343.16	68923	69108	13849990	+	URR1B	hAT-Charlie	DNA
AL627343.16	69449	69638	13849991	-	B3	B2	SINE
AL627343.16	70745	71303	13849992	-	RLTR20B1	ERVK	LTR
AL627343.16	71559	71586	13849993	+	AT_rich		Low_complexity
AL627343.16	71740	72312	13849994	-	Lx7		L1
AL627343.16	72832	73025	13849995	+	B3	B2	SINE
AL627343.16	73114	73134	13849996	+	AT_rich		Low_complexity
AL627343.16	73239	73356	13849997	-	MIR	MIR	SINE
AL627343.16	74403	74446	13849998	+	(TA)n		Simple_repeat
AL627343.16	74505	74597	13849999	+	IMPB_01		Satellite
AL627343.16	74605	74666	13850000	+	(CA)n		Simple_repeat
AL627343.16	75297	75467	13850001	+	MER5B	hAT-Charlie	DNA
AL627343.16	75480	75630	13850002	-	MER5A1	hAT-Charlie	DNA
AL627343.16	75867	76199	13850003	+	ORR1B2	ERVL-MaLR	LTR
AL627343.16	76573	76949	13850004	+	MTD	ERVL-MaLR	LTR
AL627343.16	77798	78146	13850005	-	MTEb	ERVL-MaLR	LTR
AL627343.16	78791	78952	13850006	+	RSINE1	B4	SINE
AL627343.16	79774	79902	13850007	+	L2a		L2
AL627343.16	80011	80792	13850008	-	Charlie15b	hAT-Charlie	DNA
AL627343.16	80880	81155	13850009	+	B4A	B4	SINE
AL627343.16	83914	83979	13850010	+	MIRc	MIR	SINE
AL627343.16	85006	85050	13850011	+	C-rich
AL627343.16	85548	85635	13850012	-	MIRb	MIR	SINE
AL627343.16	85951	86135	13850013	-	MIRc	MIR	SINE
AL627343.16	86918	87260	13850014	+	Charlie22a	hAT-Charlie	DNA
AL627343.16	87973	88122	13850015	-	MER20	hAT-Charlie	DNA
AL627343.16	91044	91154	13850016	+	(ATGGTG)n
AL627343.16	92549	92749	13850017	+	ORR1F	ERVL-MaLR	LTR
AL627343.16	93746	93833	13850018	+	MIRb	MIR	SINE
AL627343.16	94224	94610	13850019	+	MT2A	ERVL	LTR
AL627343.16	94612	94653	13850020	+	(CA)n		Simple_repeat
AL627343.16	94670	94702	13850021	+	(GA)n		Simple_repeat
AL627343.16	95477	95595	13850022	-	RMER15	ERVL	LTR
AL627343.16	96255	96466	13850023	+	B4A	B4	SINE
AL627343.16	96490	96569	13850024	-	RLTR31D_MM	ERVK	LTR
AL627343.16	96570	96596	13850025	+	(CA)n		Simple_repeat
AL627343.16	96789	96999	13850026	-	B3	B2	SINE
AL627343.16	99034	99098	13850027	+	B4	B4	SINE
AL627343.16	99150	99571	13850028	-	MTE2b	ERVL-MaLR	LTR
AL627343.16	99581	99968	13850029	+	MER113	hAT-Charlie	DNA
AL627343.16	100124	100155	13850030	+	(TG)n
AL627343.16	100156	100190	13850031	+	(GA)n		Simple_repeat
AL627343.16	100191	100322	13850032	+	(TG)n
AL627343.16	100350	100446	13850032	+	(TG)n
AL627343.16	100447	100541	13850033	-	PB1D10	Alu	SINE
AL627343.16	100606	100670	13850034	+	ID4_	ID	SINE
AL627343.16	101865	102095	13850035	-	L1ME3B		L1
AL627343.16	102239	102315	13850036	-	RSINE1	B4	SINE
AL627343.16	102342	102526	13850037	-	B4A	B4	SINE
AL627343.16	102528	102655	13850038	-	B1F	Alu	SINE
AL627343.16	102711	103004	13850039	-	B4	B4	SINE
AL627343.16	103210	103379	13850040	-	MIRb	MIR	SINE
AL627343.16	103874	103901	13850041	+	AT_rich		Low_complexity
AL627343.16	103939	104068	13850042	-	MER58A	hAT-Charlie	DNA
AL627343.16	104079	104233	13850043	+	L1MB8		L1
AL627343.16	104335	104355	13850044	+	GC_rich		Low_complexity
AL627343.16	104452	104786	13850043	+	L1MB8		L1
AL627343.16	104905	105048	13850045	+	B1_Mus2	Alu	SINE
AL627343.16	105062	105104	13850046	+	AT_rich		Low_complexity
AL627343.16	105113	105254	13850047	+	(TATAA)n		Simple_repeat
AL627343.16	105259	105441	13850043	+	L1MB8		L1
AL627343.16	106088	106186	13850048	+	MIR	MIR	SINE
AL627343.16	107771	107832	13850049	+	(TCCA)n
AL627343.16	107849	107883	13850050	+	(TTCA)n
AL627343.16	109146	109255	13850051	+	(TATG)n
AL627343.16	109276	109491	13850052	-	B4	B4	SINE
AL627343.16	109641	109805	13850053	-	MER53	hAT	DNA
AL627343.16	111077	111185	13850054	-	MIR	MIR	SINE
AL627343.16	111743	111781	13850055	+	(TGAA)n		Simple_repeat
AL627343.16	112024	112056	13850056	+	(TC)n
AL627343.16	112119	112322	13850057	-	URR1B	hAT-Charlie	DNA
AL627343.16	112517	112631	13850058	-	MIRc	MIR	SINE
AL627343.16	112881	112949	13850059	+	RMER30	hAT-Charlie	DNA
AL627343.16	113480	113555	13850060	+	(TTCC)n
AL627343.16	113568	113650	13850061	+	(TTCTC)n
AL627343.16	113651	113780	13850062	-	B1_Mur4	Alu	SINE
AL627343.16	114203	114245	13850063	+	(CAAA)n		Simple_repeat
AL627343.16	114544	114670	13850064	-	MIR	MIR	SINE
AL627343.16	114685	114789	13850065	+	L2c		L2
AL627343.16	115039	115069	13850066	+	(TAAA)n		Simple_repeat
AL627343.16	115525	115563	13850067	+	(CA)n		Simple_repeat
AL627343.16	115894	116883	13850068	+	L1Md_F2		L1
AL627343.16	117788	117851	13850069	+	(CA)n		Simple_repeat
AL627343.16	118369	118404	13850070	+	(GA)n		Simple_repeat
AL627343.16	118809	118933	13850071	-	MIR3	MIR	SINE
AL627343.16	119712	119874	13850072	-	MER3	hAT-Charlie	DNA
AL627343.16	121038	121063	13850073	+	(CCCCCA)n
AL627343.16	121325	121469	13850074	+	L4_A_Mam	RTE-X	LINE
AL627343.16	292	303	16283046	N	DUST
AL627343.16	1000	1225	16283047	N	DUST
AL627343.16	1467	1511	16283048	N	DUST
AL627343.16	1856	1900	16283049	N	DUST
AL627343.16	1980	1991	16283050	N	DUST
AL627343.16	2898	2904	16283051	N	DUST
AL627343.16	3929	3944	16283052	N	DUST
AL627343.16	6165	6236	16283053	N	DUST
AL627343.16	6402	6476	16283054	N	DUST
AL627343.16	7108	7186	16283055	N	DUST
AL627343.16	7761	7818	16283056	N	DUST
AL627343.16	8240	8256	16283057	N	DUST
AL627343.16	9574	9985	16283058	N	DUST
AL627343.16	10088	10097	16283059	N	DUST
AL627343.16	11842	11849	16283060	N	DUST
AL627343.16	13035	13065	16283061	N	DUST
AL627343.16	14336	14904	16283062	N	DUST
AL627343.16	15573	15654	16283063	N	DUST
AL627343.16	16424	16469	16283064	N	DUST
AL627343.16	17797	17806	16283065	N	DUST
AL627343.16	18174	18240	16283066	N	DUST
AL627343.16	18698	18756	16283067	N	DUST
AL627343.16	18906	18926	16283068	N	DUST
AL627343.16	19538	19566	16283069	N	DUST
AL627343.16	19774	19834	16283070	N	DUST
AL627343.16	20703	20722	16283071	N	DUST
AL627343.16	20946	20952	16283072	N	DUST
AL627343.16	21372	21378	16283073	N	DUST
AL627343.16	21812	21822	16283074	N	DUST
AL627343.16	22158	22169	16283075	N	DUST
AL627343.16	22538	22592	16283076	N	DUST
AL627343.16	23177	23192	16283077	N	DUST
AL627343.16	24258	24299	16283078	N	DUST
AL627343.16	25453	25824	16283079	N	DUST
AL627343.16	26112	26151	16283080	N	DUST
AL627343.16	26497	26544	16283081	N	DUST
AL627343.16	27385	27391	16283082	N	DUST
AL627343.16	27446	27470	16283083	N	DUST
AL627343.16	28190	28281	16283084	N	DUST
AL627343.16	29286	29316	16283085	N	DUST
AL627343.16	30085	30178	16283086	N	DUST
AL627343.16	30257	30344	16283087	N	DUST
AL627343.16	30372	30431	16283088	N	DUST
AL627343.16	31443	31550	16283089	N	DUST
AL627343.16	32736	32757	16283090	N	DUST
AL627343.16	32884	32926	16283091	N	DUST
AL627343.16	34204	34239	16283092	N	DUST
AL627343.16	36653	36713	16283093	N	DUST
AL627343.16	38909	39012	16283094	N	DUST
AL627343.16	39370	39382	16283095	N	DUST
AL627343.16	40828	40840	16283096	N	DUST
AL627343.16	41233	41375	16283097	N	DUST
AL627343.16	41830	41845	16283098	N	DUST
AL627343.16	43606	43639	16283099	N	DUST
AL627343.16	44400	44468	16283100	N	DUST
AL627343.16	46386	46392	16283101	N	DUST
AL627343.16	47144	47152	16283102	N	DUST
AL627343.16	48083	48276	16283103	N	DUST
AL627343.16	49082	49088	16283104	N	DUST
AL627343.16	49124	49131	16283105	N	DUST
AL627343.16	49496	49520	16283106	N	DUST
AL627343.16	49535	49544	16283107	N	DUST
AL627343.16	50097	50104	16283108	N	DUST
AL627343.16	50499	50535	16283109	N	DUST
AL627343.16	51201	51210	16283110	N	DUST
AL627343.16	51977	52008	16283111	N	DUST
AL627343.16	52528	52621	16283112	N	DUST
AL627343.16	52928	52937	16283113	N	DUST
AL627343.16	53578	53624	16283114	N	DUST
AL627343.16	54666	54672	16283115	N	DUST
AL627343.16	55511	55524	16283116	N	DUST
AL627343.16	56974	57007	16283117	N	DUST
AL627343.16	58131	58150	16283118	N	DUST
AL627343.16	60481	60700	16283119	N	DUST
AL627343.16	60894	60919	16283120	N	DUST
AL627343.16	61690	61696	16283121	N	DUST
AL627343.16	62300	62315	16283122	N	DUST
AL627343.16	63012	63028	16283123	N	DUST
AL627343.16	63337	63343	16283124	N	DUST
AL627343.16	65379	65423	16283125	N	DUST
AL627343.16	65511	65517	16283126	N	DUST
AL627343.16	65879	65890	16283127	N	DUST
AL627343.16	66358	66371	16283128	N	DUST
AL627343.16	66415	66424	16283129	N	DUST
AL627343.16	67725	67792	16283130	N	DUST
AL627343.16	68353	68396	16283131	N	DUST
AL627343.16	68688	68789	16283132	N	DUST
AL627343.16	69421	69468	16283133	N	DUST
AL627343.16	71032	71042	16283134	N	DUST
AL627343.16	71525	71586	16283135	N	DUST
AL627343.16	71668	71758	16283136	N	DUST
AL627343.16	71855	71864	16283137	N	DUST
AL627343.16	72437	72488	16283138	N	DUST
AL627343.16	72577	72583	16283139	N	DUST
AL627343.16	73012	73096	16283140	N	DUST
AL627343.16	74403	74480	16283141	N	DUST
AL627343.16	74505	74666	16283142	N	DUST
AL627343.16	74862	74894	16283143	N	DUST
AL627343.16	78414	78422	16283144	N	DUST
AL627343.16	80671	80682	16283145	N	DUST
AL627343.16	80875	80883	16283146	N	DUST
AL627343.16	81138	81211	16283147	N	DUST
AL627343.16	85006	85041	16283148	N	DUST
AL627343.16	86153	86161	16283149	N	DUST
AL627343.16	86795	86801	16283150	N	DUST
AL627343.16	90631	90642	16283151	N	DUST
AL627343.16	91044	91081	16283152	N	DUST
AL627343.16	91711	91719	16283153	N	DUST
AL627343.16	92550	92562	16283154	N	DUST
AL627343.16	94612	94702	16283155	N	DUST
AL627343.16	96501	96570	16283156	N	DUST
AL627343.16	96573	96596	16283157	N	DUST
AL627343.16	100124	100456	16283158	N	DUST
AL627343.16	100590	100596	16283159	N	DUST
AL627343.16	100667	100688	16283160	N	DUST
AL627343.16	101460	101470	16283161	N	DUST
AL627343.16	102697	102738	16283162	N	DUST
AL627343.16	104196	104202	16283163	N	DUST
AL627343.16	104335	104355	16283164	N	DUST
AL627343.16	105016	105269	16283165	N	DUST
AL627343.16	105747	105760	16283166	N	DUST
AL627343.16	107771	107883	16283167	N	DUST
AL627343.16	108240	108315	16283168	N	DUST
AL627343.16	109146	109237	16283169	N	DUST
AL627343.16	109270	109276	16283170	N	DUST
AL627343.16	109967	109991	16283171	N	DUST
AL627343.16	111205	111212	16283172	N	DUST
AL627343.16	111754	111781	16283173	N	DUST
AL627343.16	112024	112056	16283174	N	DUST
AL627343.16	112514	112521	16283175	N	DUST
AL627343.16	113461	113655	16283176	N	DUST
AL627343.16	113856	113865	16283177	N	DUST
AL627343.16	114193	114199	16283178	N	DUST
AL627343.16	114201	114268	16283179	N	DUST
AL627343.16	115039	115069	16283180	N	DUST
AL627343.16	115484	115563	16283181	N	DUST
AL627343.16	116776	116782	16283182	N	DUST
AL627343.16	116806	116813	16283183	N	DUST
AL627343.16	116855	116919	16283184	N	DUST
AL627343.16	117787	117851	16283185	N	DUST
AL627343.16	117918	117979	16283186	N	DUST
AL627343.16	118369	118404	16283187	N	DUST
AL627343.16	119942	119956	16283188	N	DUST
AL627343.16	119958	119964	16283189	N	DUST
AL627343.16	120223	120243	16283190	N	DUST
AL627343.16	121038	121063	16283191	N	DUST
AL928666.7	216	378	14018779	-	MER3	hAT-Charlie	DNA
AL928666.7	1542	1567	14018780	+	(CCCCCA)n
AL928666.7	1829	1983	14018781	+	L4_A_Mam	RTE-X	LINE
AL928666.7	2254	2550	14018782	-	L2a		L2
AL928666.7	2798	3183	14018783	+	MTEb	ERVL-MaLR	LTR
AL928666.7	3950	4037	14018784	+	B4	B4	SINE
AL928666.7	4071	4273	14018784	+	B4A	B4	SINE
AL928666.7	5179	5302	14018785	+	MIRb	MIR	SINE
AL928666.7	6063	6267	14018786	-	B3A	B2	SINE
AL928666.7	6349	6489	14018787	+	MIRb	MIR	SINE
AL928666.7	8519	8866	14018788	+	RMER1C		Other
AL928666.7	8876	9045	14018789	-	L1MC4a		L1
AL928666.7	9050	9173	14018790	-	PB1D10	Alu	SINE
AL928666.7	9187	9380	14018789	-	L1MC4a		L1
AL928666.7	9993	10260	14018791	-	ORR1F	ERVL-MaLR	LTR
AL928666.7	10313	10423	14018791	-	ORR1F	ERVL-MaLR	LTR
AL928666.7	10499	10851	14018792	+	MTEa	ERVL-MaLR	LTR
AL928666.7	13541	13764	14018793	-	MER103C	hAT-Charlie	DNA
AL928666.7	13983	14114	14018794	+	B1F	Alu	SINE
AL928666.7	14135	14290	14018795	+	B4A	B4	SINE
AL928666.7	14910	15021	14018796	-	RMER12C	ERVK	LTR
AL928666.7	15025	15078	14018797	+	(CA)n		Simple_repeat
AL928666.7	15079	15116	14018798	+	(CAGA)n		Simple_repeat
AL928666.7	15117	15197	14018799	-	RLTR20A4	ERVK	LTR
AL928666.7	16072	16435	14018800	+	ORR1F	ERVL-MaLR	LTR
AL928666.7	17569	17650	14018801	+	GA-rich
AL928666.7	17850	17945	14018802	-	MIR3	MIR	SINE
AL928666.7	18980	19200	14018803	+	MIR	MIR	SINE
AL928666.7	19225	19329	14018804	+	B3	B2	SINE
AL928666.7	19813	19946	14018805	+	L2c		L2
AL928666.7	20561	20921	14018806	-	MTD	ERVL-MaLR	LTR
AL928666.7	21467	21542	14018807	+	MIR	MIR	SINE
AL928666.7	21896	21977	14018808	+	(TC)n
AL928666.7	21990	22065	14018809	+	RLTR17B_Mm	ERVK	LTR
AL928666.7	22052	22310	14018810	-	B4	B4	SINE
AL928666.7	22525	22661	14018811	-	MIR	MIR	SINE
AL928666.7	22666	22786	14018812	-	LTR16E2	ERVL	LTR
AL928666.7	23124	23485	14018813	-	ORR1E	ERVL-MaLR	LTR
AL928666.7	23493	24228	14018814	+	RMER6A	ERVK	LTR
AL928666.7	26436	26641	14018815	+	ID_B1	B4	SINE
AL928666.7	27249	27672	14018816	-	MT2C_Mm	ERVL	LTR
AL928666.7	27701	27814	14018817	-	RSINE1	B4	SINE
AL928666.7	28491	28559	14018818	+	(TG)n
AL928666.7	29395	29443	14018819	+	(TTCC)n
AL928666.7	29453	29509	14018820	+	(TCTCCC)n
AL928666.7	29677	29750	14018821	+	(CA)n		Simple_repeat
AL928666.7	30468	30614	14018822	+	MLTR14	ERV1	LTR
AL928666.7	31120	31338	14018823	-	MTEa	ERVL-MaLR	LTR
AL928666.7	31339	31406	14018824	+	(TC)n
AL928666.7	31407	31559	14018823	-	MTEa	ERVL-MaLR	LTR
AL928666.7	32037	32142	14018825	-	RCHARR1	hAT-Charlie	DNA
AL928666.7	32143	32301	14018826	+	RSINE1	B4	SINE
AL928666.7	32302	32444	14018825	-	RCHARR1	hAT-Charlie	DNA
AL928666.7	32544	32840	14018825	-	RCHARR1	hAT-Charlie	DNA
AL928666.7	33044	33225	14018827	-	MTD	ERVL-MaLR	LTR
AL928666.7	34654	34734	14018828	-	Charlie22a	hAT-Charlie	DNA
AL928666.7	34844	35165	14018829	+	MLT1A0	ERVL-MaLR	LTR
AL928666.7	35167	35226	14018830	-	MIRc	MIR	SINE
AL928666.7	35338	35628	14018828	-	Charlie22a	hAT-Charlie	DNA
AL928666.7	36005	36216	14018831	+	L1_Mus3		L1
AL928666.7	36228	36271	14018832	+	polypurine
AL928666.7	36272	36457	14018833	+	GA-rich
AL928666.7	36458	36506	14018834	+	(GAA)n		Simple_repeat
AL928666.7	36790	36817	14018835	+	(TCCCC)n
AL928666.7	37749	37798	14018836	+	(CA)n		Simple_repeat
AL928666.7	38729	38900	14018837	+	MER33	hAT-Charlie	DNA
AL928666.7	38895	38925	14018838	-	B3A	B2	SINE
AL928666.7	38926	39324	14018839	+	MTB	ERVL-MaLR	LTR
AL928666.7	39326	39380	14018840	+	(TG)n
AL928666.7	39381	39528	14018838	-	B3A	B2	SINE
AL928666.7	39586	39734	14018841	+	RSINE1	B4	SINE
AL928666.7	39741	39762	14018842	+	AT_rich		Low_complexity
AL928666.7	39878	39935	14018843	-	L1MA5		L1
AL928666.7	40755	40795	14018844	+	(TG)n
AL928666.7	41298	41395	14018845	+	(CAGAGA)n		Simple_repeat
AL928666.7	41614	41706	14018846	+	L2a		L2
AL928666.7	42914	42965	14018847	+	(TG)n
AL928666.7	42966	43224	14018848	-	B4A	B4	SINE
AL928666.7	43250	43292	14018849	+	(GAA)n		Simple_repeat
AL928666.7	43293	43470	14018850	+	(GGA)n		Simple_repeat
AL928666.7	43471	43479	14018851	+	(GAA)n		Simple_repeat
AL928666.7	43482	43507	14018852	+	(GGGA)n		Simple_repeat
AL928666.7	43508	43592	14018853	+	(GAAA)n		Simple_repeat
AL928666.7	45000	45141	14018854	+	B1F1	Alu	SINE
AL928666.7	45274	45362	14018855	-	MIRc	MIR	SINE
AL928666.7	45416	45509	14018856	-	MIR3	MIR	SINE
AL928666.7	46025	46159	14018857	-	B1F	Alu	SINE
AL928666.7	47091	47147	14018858	+	(CAGG)n		Simple_repeat
AL928666.7	49345	49386	14018859	+	(TG)n
AL928666.7	49397	49443	14018860	-	B3	B2	SINE
AL928666.7	50834	50887	14018861	-	MIR3	MIR	SINE
AL928666.7	51391	51746	14018862	-	MTEa	ERVL-MaLR	LTR
AL928666.7	51825	51989	14018863	+	RSINE1	B4	SINE
AL928666.7	52544	52690	14018864	+	MIRb	MIR	SINE
AL928666.7	53542	53673	14018865	-	RMER15	ERVL	LTR
AL928666.7	54038	54097	14018866	+	(TA)n		Simple_repeat
AL928666.7	54623	54772	14018867	+	MIRb	MIR	SINE
AL928666.7	54767	54945	14018868	-	MIRb	MIR	SINE
AL928666.7	54946	55304	14018869	+	ORR1D2	ERVL-MaLR	LTR
AL928666.7	55305	55358	14018868	-	MIRb	MIR	SINE
AL928666.7	55715	55775	14018870	+	GA-rich
AL928666.7	55973	56072	14018871	+	MIR	MIR	SINE
AL928666.7	56117	56244	14018872	+	MLT1L	ERVL-MaLR	LTR
AL928666.7	56594	57356	14018873	+	RMER1B		Other
AL928666.7	57427	57477	14018874	+	CT-rich
AL928666.7	58372	58649	14018875	+	ORR1E	ERVL-MaLR	LTR
AL928666.7	59770	59965	14018876	+	LTR50	ERVL	LTR
AL928666.7	60126	60336	14018876	+	LTR50	ERVL	LTR
AL928666.7	60442	60489	14018877	+	L2a		L2
AL928666.7	61162	61357	14018878	-	B4	B4	SINE
AL928666.7	61373	61526	14018879	+	(TC)n
AL928666.7	61740	61914	14018880	+	MLT1K	ERVL-MaLR	LTR
AL928666.7	62949	62971	14018881	+	(CAAA)n		Simple_repeat
AL928666.7	63599	63680	14018882	-	MIR3	MIR	SINE
AL928666.7	63861	64102	14018883	-	B4A	B4	SINE
AL928666.7	64335	64383	14018884	+	(TA)n		Simple_repeat
AL928666.7	64785	64907	14018885	-	RSINE1	B4	SINE
AL928666.7	65677	65851	14018886	+	MIRb	MIR	SINE
AL928666.7	66081	66128	14018887	-	MIRb	MIR	SINE
AL928666.7	66871	66996	14018888	+	MER45A	hAT-Tip100	DNA
AL928666.7	67062	67121	14018889	-	ID4	ID	SINE
AL928666.7	67140	67252	14018890	-	PB1D10	Alu	SINE
AL928666.7	67759	67789	14018891	+	(TG)n
AL928666.7	67824	67866	14018892	+	(CA)n		Simple_repeat
AL928666.7	67889	68141	14018893	-	B4	B4	SINE
AL928666.7	68525	68655	14018894	-	MER5A	hAT-Charlie	DNA
AL928666.7	69540	69636	14018895	+	(CA)n		Simple_repeat
AL928666.7	71024	71364	14018896	+	MTEa	ERVL-MaLR	LTR
AL928666.7	72245	72555	14018897	-	RMER15	ERVL	LTR
AL928666.7	73519	73623	14018898	+	(TG)n
AL928666.7	74026	74311	14018899	+	L2a		L2
AL928666.7	74674	74769	14018900	-	Tigger16b	TcMar-Tigger	DNA
AL928666.7	76465	76910	14018901	-	RMER15	ERVL	LTR
AL928666.7	77982	78675	14018902	+	L1MA4A		L1
AL928666.7	78750	78961	14018903	-	URR1B	hAT-Charlie	DNA
AL928666.7	79799	79843	14018904	+	(TG)n
AL928666.7	81361	81530	14018905	-	MIRc	MIR	SINE
AL928666.7	81588	81649	14018906	+	MIRb	MIR	SINE
AL928666.7	81704	81922	14018907	-	MIRb	MIR	SINE
AL928666.7	82665	82748	14018908	+	MIRb	MIR	SINE
AL928666.7	82749	82802	14018909	+	(TG)n
AL928666.7	82842	82903	14018910	+	(TA)n		Simple_repeat
AL928666.7	83334	83464	14018911	-	UCON7		DNA?
AL928666.7	83799	83904	14018912	+	MER20	hAT-Charlie	DNA
AL928666.7	84025	84088	14018913	+	(CA)n		Simple_repeat
AL928666.7	84224	84319	14018914	+	CT-rich
AL928666.7	84932	84970	14018915	-	L2c		L2
AL928666.7	85032	85312	14018916	+	L2a		L2
AL928666.7	85494	85615	14018917	-	X7A_LINE	CR1	LINE
AL928666.7	86581	86614	14018918	+	AT_rich		Low_complexity
AL928666.7	86634	86793	14018919	-	B3A	B2	SINE
AL928666.7	87145	87281	14018920	-	L2c		L2
AL928666.7	87398	87434	14018921	-	MIR	MIR	SINE
AL928666.7	87687	87919	14018922	+	LTR16A2	ERVL	LTR
AL928666.7	88366	88638	14018923	+	RMER15	ERVL	LTR
AL928666.7	88854	89193	14018924	+	ORR1F	ERVL-MaLR	LTR
AL928666.7	89238	89305	14018925	+	ORR1C2	ERVL-MaLR	LTR
AL928666.7	90112	90265	14018926	-	MIR3	MIR	SINE
AL928666.7	90865	91044	14018927	+	Charlie19a	hAT-Charlie	DNA
AL928666.7	446	460	19573956	N	DUST
AL928666.7	462	468	19573957	N	DUST
AL928666.7	727	747	19573958	N	DUST
AL928666.7	1542	1567	19573959	N	DUST
AL928666.7	4215	4221	19573960	N	DUST
AL928666.7	8498	8504	19573961	N	DUST
AL928666.7	8911	8917	19573962	N	DUST
AL928666.7	9048	9061	19573963	N	DUST
AL928666.7	10493	10499	19573964	N	DUST
AL928666.7	10834	10840	19573965	N	DUST
AL928666.7	11269	11275	19573966	N	DUST
AL928666.7	11643	11649	19573967	N	DUST
AL928666.7	14966	15171	19573968	N	DUST
AL928666.7	17572	17658	19573969	N	DUST
AL928666.7	19832	19840	19573970	N	DUST
AL928666.7	20284	20290	19573971	N	DUST
AL928666.7	21591	21609	19573972	N	DUST
AL928666.7	21675	21682	19573973	N	DUST
AL928666.7	21896	22027	19573974	N	DUST
AL928666.7	24541	24559	19573975	N	DUST
AL928666.7	26078	26096	19573976	N	DUST
AL928666.7	26284	26297	19573977	N	DUST
AL928666.7	28491	28550	19573978	N	DUST
AL928666.7	28994	29049	19573979	N	DUST
AL928666.7	29395	29507	19573980	N	DUST
AL928666.7	29677	29750	19573981	N	DUST
AL928666.7	31133	31148	19573982	N	DUST
AL928666.7	31285	31397	19573983	N	DUST
AL928666.7	35250	35256	19573984	N	DUST
AL928666.7	35568	35574	19573985	N	DUST
AL928666.7	36210	36216	19573986	N	DUST
AL928666.7	36228	36494	19573987	N	DUST
AL928666.7	36790	36818	19573988	N	DUST
AL928666.7	37738	37747	19573989	N	DUST
AL928666.7	37749	37798	19573990	N	DUST
AL928666.7	38143	38170	19573991	N	DUST
AL928666.7	39326	39376	19573992	N	DUST
AL928666.7	40755	40795	19573993	N	DUST
AL928666.7	41298	41407	19573994	N	DUST
AL928666.7	42914	42988	19573995	N	DUST
AL928666.7	43249	43592	19573996	N	DUST
AL928666.7	44045	44080	19573997	N	DUST
AL928666.7	45250	45256	19573998	N	DUST
AL928666.7	47081	47147	19573999	N	DUST
AL928666.7	47633	47641	19574000	N	DUST
AL928666.7	48453	48514	19574001	N	DUST
AL928666.7	48548	48554	19574002	N	DUST
AL928666.7	49345	49386	19574003	N	DUST
AL928666.7	52953	52967	19574004	N	DUST
AL928666.7	52983	52996	19574005	N	DUST
AL928666.7	53877	53904	19574006	N	DUST
AL928666.7	54038	54089	19574007	N	DUST
AL928666.7	55715	55790	19574008	N	DUST
AL928666.7	56674	56736	19574009	N	DUST
AL928666.7	57409	57477	19574010	N	DUST
AL928666.7	61354	61526	19574011	N	DUST
AL928666.7	61537	61549	19574012	N	DUST
AL928666.7	62931	62989	19574013	N	DUST
AL928666.7	63830	63844	19574014	N	DUST
AL928666.7	64335	64383	19574015	N	DUST
AL928666.7	67548	67557	19574016	N	DUST
AL928666.7	67755	67789	19574017	N	DUST
AL928666.7	67827	67866	19574018	N	DUST
AL928666.7	69540	69635	19574019	N	DUST
AL928666.7	69954	69967	19574020	N	DUST
AL928666.7	73519	73655	19574021	N	DUST
AL928666.7	78550	78556	19574022	N	DUST
AL928666.7	79799	79843	19574023	N	DUST
AL928666.7	82749	82798	19574024	N	DUST
AL928666.7	82842	82903	19574025	N	DUST
AL928666.7	82917	83028	19574026	N	DUST
AL928666.7	84022	84088	19574027	N	DUST
AL928666.7	84223	84321	19574028	N	DUST
AL928666.7	85118	85136	19574029	N	DUST
AL928666.7	87015	87022	19574030	N	DUST
AL928666.7	87850	87857	19574031	N	DUST
AL928666.7	88747	88754	19574032	N	DUST
AL928666.7	88776	88788	19574033	N	DUST
AL928666.7	89306	89328	19574034	N	DUST

Join Legend

Curator Links

Alignment for AL627343.16 and AL928666.7

Alignment Summary

Alignment 1 of 1