Genome Reference Consortium
Skip navigation and go to main content

Alignment last updated: 11/20/2008 16:56:37

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.1%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.1%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AL646020.15 and AL646047.9

Download Genome Workbench

Swap Rows Rotate Orientations

AL646020.15 Mouse DNA sequence from clone RP23-74L9 on chromosome 11, complete sequence [htgs_phase3]

Length: 73,838 bp

AL646047.9 Mouse DNA sequence from clone RP23-69P8 on chromosome 11, complete sequence [htgs_phase3]

Length: 93,553 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 1558
  • Total Length: 2001
  • Aligned Length: 2000
  • Percent Identity: 100
  • Number of Gaps: 1
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (A)
Overlap Image

Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
A738382002++chenhcTaxid 10090 chrom 11 Primary assembly2008-11-20 16:56:37.096633981558GRCm39, GRCm38, MGSCv37


down arrow

Alignment 1 of 1

 AL646020.15 : + : 71839..73838
 AL646047.9 : + : 1..2001
 Mismatches = 0, Gaps = 1, Length = 2001
 Percent identity = 100%
 Score = 3951 bits (1993), Expect = 0
  0 BAC and 7 Fosmid bridging clones.
  0 BAC and 6 Fosmid concordant clones.
  0 BAC and 1 Fosmid discordant clones.

AL646020.15 >71839   gaattcataaaactataaagaactgggcatggtggcgcatgcctttaatcccagcgggcg 71898  
AL646047.9  >1       ............................................................ 60     

AL646020.15 >71899   gatttctgtgttcgaggccagcctggtctacaaagtgagttctaggacagcctgggctat 71958  
AL646047.9  >61      ............................................................ 120    

AL646020.15 >71959   acagagaaaccctgtcttgaaaaaaccaaaaccaaaccagaagaacaaaacaaaaaacta 72018  
AL646047.9  >121     ............................................................ 180    

AL646020.15 >72019   taaagagagaaggaatatgtttgtggaggtgtagtcaggtatgtgggaaggggggcctct 72078  
AL646047.9  >181     ............................................................ 240    

AL646020.15 >72079   gcgggcccatgctgagccatcccttcccctacacccagagaccagccacacaatgacggt 72138  
AL646047.9  >241     ............................................................ 300    

AL646020.15 >72139   atagtataaaatagtttagggcttgtggaggggagttgagaggatagtggagacagagaa 72198  
AL646047.9  >301     ............................................................ 360    

AL646020.15 >72199   aggcagagagagagagagagagagagagagagagagagagagagagagagagagagagag 72258  
AL646047.9  >361     ............................................................ 420    

AL646020.15 >72259   gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 72318  
AL646047.9  >421     ............................................................ 480    

AL646020.15 >72319   gaagaagaagaagaagaagaagaaatcagtcatgagcacatggaggggggaggggaatgg 72378  
AL646047.9  >481     ............................................................ 540    

AL646020.15 >72379   gaagagaggggggaaggggtgagaggatcaagaggaagcaagaaggcaagagcaagagaa 72438  
AL646047.9  >541     ............................................................ 600    

AL646020.15 >72439   aacaaaggtggagagccgccccttttagccccttttatagtgagtgaggcatacctggcc 72498  
AL646047.9  >601     ............................................................ 660    

AL646020.15 >72499   attgccaggtaactgtggggtggaacttagacaaaatgctaacactctcagcacagataa 72558  
AL646047.9  >661     ............................................................ 720    

AL646020.15 >72559   tcataaaaatcaaaatactgattaactctaagcagcactgagacactgtaagttttccac 72618  
AL646047.9  >721     ............................................................ 780    

AL646020.15 >72619   gcgagcccccccccccccccccc-gccccatagttcatgaatggagagtttcagaaatct 72677  
AL646047.9  >781     .......................c.................................... 840    

AL646020.15 >72678   gttccaaggagtctcttgtgaaggcctgtaggttcgttcctggctgtgatcacctttgag 72737  
AL646047.9  >841     ............................................................ 900    

AL646020.15 >72738   aagacctagggttgtcaccgctggaggaggaacactgacaataccaggaggcatgttctg 72797  
AL646047.9  >901     ............................................................ 960    

AL646020.15 >72798   tccttggagggagcatggcgtgacacagttgctttacaaggagtttggcacagtgcttgt 72857  
AL646047.9  >961     ............................................................ 1020   

AL646020.15 >72858   ttgtttactttcttaaaggaaaagtggattacttttagagcataagaatatatttaaagt 72917  
AL646047.9  >1021    ............................................................ 1080   

AL646020.15 >72918   ttgtatcttatatgtttaaacgtttgcatttgttttctctgtgcatgtgtgagagagctc 72977  
AL646047.9  >1081    ............................................................ 1140   

AL646020.15 >72978   aagtgtacgctgtgtgccatagtgctcctgtacaggttagaggacaactgatgggggcta 73037  
AL646047.9  >1141    ............................................................ 1200   

AL646020.15 >73038   gtcctctcttccagtcatactgctcctggtcaggcttggtggaaggaacctttacccact 73097  
AL646047.9  >1201    ............................................................ 1260   

AL646020.15 >73098   gagccatttccctggcctgttttgttttggtttttattttatgggcacgggtgctttctc 73157  
AL646047.9  >1261    ............................................................ 1320   

AL646020.15 >73158   tgtatgtatgtctgtgcaccacttgtgtcttggtacccactgaggtcagaagagaatgtt 73217  
AL646047.9  >1321    ............................................................ 1380   

AL646020.15 >73218   ggatcctttataactggatttacagacagttgtgagctaccatgtggttgcttgggatca 73277  
AL646047.9  >1381    ............................................................ 1440   

AL646020.15 >73278   aacctggatcctgtggaagagcagtcagtgtttttttcactgctgagccatctctccagc 73337  
AL646047.9  >1441    ............................................................ 1500   

AL646020.15 >73338   tcccaatatttttttattattttttattttttttatttaaagtctcgtataatccaaccc 73397  
AL646047.9  >1501    ............................................................ 1560   

AL646020.15 >73398   actgtgtgaaagatgactttgaactcccgatcgtcctgcatttctagcgtgctaaggcgc 73457  
AL646047.9  >1561    ............................................................ 1620   

AL646020.15 >73458   taggcatgcacccccaccgcagtgtcatcagaagctttagcagatgggtctccacacacc 73517  
AL646047.9  >1621    ............................................................ 1680   

AL646020.15 >73518   tgacacttaccccgtctactcaatcaaaacacacgcaggagaaacagcactgccagagct 73577  
AL646047.9  >1681    ............................................................ 1740   

AL646020.15 >73578   tcagccttggagacggccaagggtcaaggaaaatgacataaacgtacaatagaatacaac 73637  
AL646047.9  >1741    ............................................................ 1800   

AL646020.15 >73638   acagctctgaaacaggtcaactaccattacacatgatatacactacaactctgtatctaa 73697  
AL646047.9  >1801    ............................................................ 1860   

AL646020.15 >73698   atgatggacttccagagaataatcattaatgtgatgaccaatacctttatgtatttatga 73757  
AL646047.9  >1861    ............................................................ 1920   

AL646020.15 >73758   acttcctgtagaggatgtctatataatgagctgctagaaaatagttgataagtcaagcta 73817  
AL646047.9  >1921    ............................................................ 1980   

AL646020.15 >73818   ttggagtatggttgtttctgt 73838  
AL646047.9  >1981    ..................... 2001   



Events
IdTypeDateWhodidComment
2995ImportOldDb09/02/2005 11:46:00f_old_db
2996ReSetShortOvlp09/04/2008 10:31:48dbo
174155CreateSwitchPt11/20/2008 16:56:37chenhc
tpf_builder 1.6  Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib



down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
C3H-184D4AL646020.1599.25%pos 4944 (R+)  
C3H-238B16AL646047.999.74%pos 12128 (R+)  
C3H-241F21 AL646020.1599.64%pos 51730 (F-)
C3H-241F22 AL646020.1599.87%pos 51689 (F-)
CH29-527E14 AL646047.999.86%pos 16051 (F-)
CH29-530O19AL646047.999.74%pos 48259 (R+)  
CH29-548A19AL646047.999.66%pos 26123 (R-)  
CH29-560K11 AL646020.1599.87%pos 23765 (F+)
CH29-564F16 AL646047.999.24%pos 26109 (F-)
RP23-225I14AL646047.999.66%pos 65167 (R+)  
RP24-250P8AL646047.999.16%pos 14622 (R-)  
RP24-72L12AL646047.999.7%pos 69974 (R-)  

down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
WI1-1029C8AL646020.1599.76%pos 66308 (R+) AL646047.999.33%pos 23972 (F-)
WI1-1167N5 AL646047.999.8%pos 83988 (F+)
WI1-1203C4AL646020.15100%pos 48372 (R-)  
WI1-1266I22 AL646020.1599.83%pos 32614 (F-)
WI1-1371K2 AL646047.9100%pos 90015 (F+)
WI1-1371K7 AL646047.999.78%pos 90015 (F+)
WI1-140C14AL646020.15100%pos 24898 (R-)  
WI1-1420F24 AL646047.999.58%pos 61765 (F-)
WI1-1488C10AL646047.9100%pos 51833 (R-) AL646047.9100%pos 9967 (F+)
WI1-1499I18 AL646047.9100%pos 89897 (F+)
WI1-1686O8AL646020.15100%pos 51556 (R+) AL646047.9100%pos 22642 (F-)
WI1-1709H7AL646020.15100%pos 62893 (R-) AL646020.15100%pos 21399 (F+)
WI1-1790B23AL646047.9100%pos 2768 (R+) AL646047.999.15%pos 44303 (F-)
WI1-1886P4AL646047.999.55%pos 83018 (R-) AL646047.999.8%pos 44107 (F+)
WI1-1973H18AL646047.999.74%pos 28688 (R+) AL646047.9100%pos 67655 (F-)
WI1-197B21AL646020.1599.85%pos 49534 (R+) AL646047.999.78%pos 20528 (F-)
WI1-197F19AL646020.1599.84%pos 49534 (R+) AL646047.9100%pos 20539 (F-)
WI1-199E21AL646020.15100%pos 60422 (R-) AL646020.15100%pos 21408 (F+)
WI1-2086A3AL646020.15100%pos 41035 (R-)  
WI1-2090J14 AL646020.15100%pos 61610 (F-)
WI1-2168D4AL646020.15100%pos 440 (R-)  
WI1-2190J18AL646020.1599.63%pos 67613 (R+) AL646047.999.48%pos 34234 (F-)
WI1-261C5AL646047.9100%pos 74018 (R-) AL646047.999.39%pos 34299 (F+)
WI1-2900G20 AL646020.1599.05%pos 21224 (F-)
WI1-2909D8 AL646047.999.86%pos 91810 (F+)
WI1-573B1AL646047.9100%pos 13683 (R-) AL646020.15100%pos 48745 (F+)
WI1-599G7AL646047.9100%pos 62595 (R+)  
WI1-607N22 AL646047.9100%pos 51439 (F+)
WI1-641N18 AL646047.9100%pos 89738 (F+)
WI1-676P19AL646020.15100%pos 61599 (R-) AL646020.1599.74%pos 21732 (F+)
WI1-765H6 AL646047.9100%pos 89741 (F+)
WI1-82E7AL646047.9100%pos 34373 (R-) AL646020.1599.84%pos 66724 (F+)
WI1-902G18 AL646020.15100%pos 67262 (F+)

down arrow Repeats
acc start stop repeat id strand name family class
AL646020.15 6201 6304 14133845 - PB1D10 Alu SINE
AL646020.15 6441 6612 14133846 - B2_Mm2 B2 SINE
AL646020.15 6624 6690 14133847 - BC1_Mm ID SINE
AL646020.15 6850 7034 14133848 - ID_B1 B4 SINE
AL646020.15 7561 7673 14133849 - B1_Mus1 Alu SINE
AL646020.15 7711 7736 14133850 + (T)n
AL646020.15 7737 7884 14133851 - B1_Mus2 Alu SINE
AL646020.15 8197 8343 14133852 + B1_Mus2 Alu SINE
AL646020.15 8344 8376 14133853 + (CAAAAA)n Simple_repeat
AL646020.15 8504 8629 14133854 + B3 B2 SINE
AL646020.15 8651 8727 14133855 + ID4_ ID SINE
AL646020.15 9185 9348 14133856 + B1_Mus1 Alu SINE
AL646020.15 9468 9578 14133857 - PB1D10 Alu SINE
AL646020.15 9658 9840 14133858 - ID_B1 B4 SINE
AL646020.15 10143 10270 14133859 + ID_B1 B4 SINE
AL646020.15 10275 10421 14133860 + B1_Mus1 Alu SINE
AL646020.15 11264 11360 14133861 - B1_Mur4 Alu SINE
AL646020.15 11497 11584 14133862 - PB1D11 Alu SINE
AL646020.15 12182 12272 14133863 - B1F2 Alu SINE
AL646020.15 12307 12328 14133864 + ID_B1 B4 SINE
AL646020.15 12329 12465 14133865 + B1_Mus2 Alu SINE
AL646020.15 12476 12575 14133866 + (GAAA)n Simple_repeat
AL646020.15 12589 12670 14133867 - B1F Alu SINE
AL646020.15 12683 12818 14133868 - B2_Mm2 B2 SINE
AL646020.15 12819 13002 14133869 - B3 B2 SINE
AL646020.15 13027 13053 14133870 - B1_Mus1 Alu SINE
AL646020.15 13054 13245 14133871 - B2_Mm2 B2 SINE
AL646020.15 13246 13383 14133870 - B1_Mus1 Alu SINE
AL646020.15 13384 13471 14133872 - B3A B2 SINE
AL646020.15 13523 13656 14133873 + B1_Mm Alu SINE
AL646020.15 13687 13765 14133872 - B3A B2 SINE
AL646020.15 13781 13884 14133874 - RSINE1 B4 SINE
AL646020.15 14034 14213 14133875 + B3 B2 SINE
AL646020.15 4779 4875 14133844 - ID_B1 B4 SINE
AL646020.15 4494 4666 14133843 + B2_Mm2 B2 SINE
AL646020.15 3841 3874 14133842 + (CAAAA)n Simple_repeat
AL646020.15 3668 3839 14133841 + B2_Mm2 B2 SINE
AL646020.15 3448 3594 14133840 - B2_Mm2 B2 SINE
AL646020.15 3410 3432 14133839 + (CAAAC)n Simple_repeat
AL646020.15 3278 3409 14133838 + B1_Mm Alu SINE
AL646020.15 3104 3276 14133837 + B3 B2 SINE
AL646020.15 2821 2934 14133833 + B4A B4 SINE
AL646020.15 2796 2820 14133836 + AT_rich Low_complexity
AL646020.15 2604 2795 14133835 + B2_Mm1a B2 SINE
AL646020.15 2419 2574 14133834 + RSINE1 B4 SINE
AL646020.15 2327 2412 14133833 + B4A B4 SINE
AL646020.15 2081 2262 14133832 - B3 B2 SINE
AL646020.15 1919 2048 14133831 - B1_Mur3 Alu SINE
AL646020.15 1774 1916 14133830 - B3A B2 SINE
AL646020.15 1601 1742 14133829 - B1_Mur1 Alu SINE
AL646020.15 1450 1596 14133828 - B1_Mus2 Alu SINE
AL646020.15 1427 1449 14133827 + (T)n
AL646020.15 1262 1423 14133825 - B2_Mm2 B2 SINE
AL646020.15 1074 1261 14133826 + B2_Mm1a B2 SINE
AL646020.15 1044 1073 14133825 - B2_Mm2 B2 SINE
AL646020.15 635 790 14133824 - B1_Mur2 Alu SINE
AL646020.15 371 546 14133823 + B3 B2 SINE
AL646020.15 14335 14481 14133876 + B1_Mus2 Alu SINE
AL646020.15 14531 14589 14133877 + (CA)n Simple_repeat
AL646020.15 14696 14898 14133878 + B3 B2 SINE
AL646020.15 14924 14953 14133879 + (A)n Simple_repeat
AL646020.15 14958 15160 14133880 - B3 B2 SINE
AL646020.15 15177 15268 14133881 - L1Md_A L1
AL646020.15 15598 15722 14133882 - B3A B2 SINE
AL646020.15 15726 15753 14133883 + AT_rich Low_complexity
AL646020.15 15777 15897 14133884 - B1_Mur3 Alu SINE
AL646020.15 16004 16024 14133885 + AT_rich Low_complexity
AL646020.15 16515 16638 14133886 - B1_Mur4 Alu SINE
AL646020.15 16639 16738 14133887 + L1Md_A L1
AL646020.15 16781 16858 14133888 - L1Md_T L1
AL646020.15 16981 17119 14133889 + L1M3 L1
AL646020.15 17269 17417 14133890 + MTEa ERVL-MaLR LTR
AL646020.15 17430 17578 14133891 + B1_Mus2 Alu SINE
AL646020.15 17579 17615 14133892 + (A)n Simple_repeat
AL646020.15 17616 18045 14133893 + MTE-int ERVL-MaLR LTR
AL646020.15 18077 18106 14133894 + AT_rich Low_complexity
AL646020.15 18119 18290 14133895 - B3 B2 SINE
AL646020.15 18344 18364 14133896 + AT_rich Low_complexity
AL646020.15 18431 18524 14133897 + B1F Alu SINE
AL646020.15 18775 18919 14133898 + RSINE1 B4 SINE
AL646020.15 19121 19245 14133899 - B1_Mus1 Alu SINE
AL646020.15 19690 19831 14133900 + B1_Mm Alu SINE
AL646020.15 19836 19879 14133901 + (A)n Simple_repeat
AL646020.15 21173 21196 14133902 + GC_rich Low_complexity
AL646020.15 22307 22326 14133903 + (GGGTG)n
AL646020.15 22327 22456 14133904 + B1_Mus2 Alu SINE
AL646020.15 22460 22632 14133905 + B2_Mm2 B2 SINE
AL646020.15 23452 23526 14133906 + PB1D11 Alu SINE
AL646020.15 23738 23813 14133907 + MIRc MIR SINE
AL646020.15 23914 24057 14133908 - B4A B4 SINE
AL646020.15 24615 24697 14133909 - B1F Alu SINE
AL646020.15 24750 25013 14133910 + L1M4 L1
AL646020.15 25082 25180 14133911 + B3 B2 SINE
AL646020.15 25181 25223 14133912 + RLTR10B ERVK LTR
AL646020.15 25245 25566 14133913 + RLTR10B ERVK LTR
AL646020.15 25567 25831 14133913 + MMERVK10C-int ERVK
AL646020.15 25908 25978 14133914 + A-rich
AL646020.15 25979 26025 14133915 + MMERVK10C-int ERVK
AL646020.15 26029 26287 14133915 + MMERVK10C-int ERVK
AL646020.15 26291 26499 14133915 + MMERVK10C-int ERVK
AL646020.15 26508 26928 14133915 + MMERVK10C-int ERVK
AL646020.15 26920 27867 14133915 + MMERVK10C-int ERVK
AL646020.15 27868 28059 14133916 - B2_Mm1t B2 SINE
AL646020.15 28060 28091 14133915 + MMERVK10C-int ERVK
AL646020.15 28156 28386 14133915 + RLTR10B2 ERVK LTR
AL646020.15 28449 28865 14133917 - RLTR10C ERVK LTR
AL646020.15 28866 28886 14133918 + (CA)n Simple_repeat
AL646020.15 28911 28958 14133919 + AT_rich Low_complexity
AL646020.15 29093 29270 14133920 + B4A B4 SINE
AL646020.15 29297 29413 14133921 + Lx9 L1
AL646020.15 29460 29536 14133922 + L2a L2
AL646020.15 29585 29632 14133923 + (CA)n Simple_repeat
AL646020.15 29734 29819 14133924 - RLTR12B ERVK LTR
AL646020.15 29820 29880 14133925 + L1_Mus1 L1
AL646020.15 30849 30880 14133926 + A-rich
AL646020.15 30892 31075 14133924 - RLTR12B ERVK LTR
AL646020.15 31076 31444 14133927 - RLTR10B2 ERVK LTR
AL646020.15 31445 31748 14133928 - RLTR12B ERVK LTR
AL646020.15 31899 32084 14133929 + B2_Mm2 B2 SINE
AL646020.15 32162 32307 14133930 + B1_Mus2 Alu SINE
AL646020.15 32308 32332 14133931 + (A)n Simple_repeat
AL646020.15 32743 33543 14133932 - RMER19B ERVK LTR
AL646020.15 33557 33727 14133933 + B2_Mm1a B2 SINE
AL646020.15 33811 34170 14133934 + MYSERV-int ERVK
AL646020.15 34171 34317 14133935 + B1_Mm Alu SINE
AL646020.15 34350 34387 14133936 + (CCAA)n Simple_repeat
AL646020.15 34436 34612 14133937 + RMER4A ERVK LTR
AL646020.15 34629 34762 14133934 + MYSERV-int ERVK
AL646020.15 34763 34936 14133938 - B2_Mm2 B2 SINE
AL646020.15 34937 35315 14133934 + MYSERV-int ERVK
AL646020.15 35316 35492 14133939 + B2_Mm2 B2 SINE
AL646020.15 35493 35639 14133940 - B1_Mus2 Alu SINE
AL646020.15 35647 35679 14133934 + MYSERV-int ERVK
AL646020.15 35680 35705 14133941 + (GA)n Simple_repeat
AL646020.15 35706 36265 14133934 + MYSERV-int ERVK
AL646020.15 36323 36360 14133942 + (TTTTTG)n
AL646020.15 36361 36516 14133943 - B1_Mm Alu SINE
AL646020.15 36630 36767 14133944 + B1_Mus2 Alu SINE
AL646020.15 36789 36855 14133934 + MYSERV-int ERVK
AL646020.15 36856 37040 14133945 - B2_Mm1t B2 SINE
AL646020.15 37041 37166 14133934 + MYSERV-int ERVK
AL646020.15 37167 37671 14133934 + RLTR11A2 ERVK LTR
AL646020.15 37677 37835 14133946 + B3 B2 SINE
AL646020.15 37863 37943 14133947 - ID_B1 B4 SINE
AL646020.15 37944 38092 14133948 - B1_Mus1 Alu SINE
AL646020.15 38093 38237 14133947 - ID_B1 B4 SINE
AL646020.15 38247 38303 14133949 + (TATG)n
AL646020.15 38327 38587 14133950 - B4A B4 SINE
AL646020.15 38589 38895 14133951 - BLACKJACK hAT-Blackjack DNA
AL646020.15 38904 38991 14133952 + PB1D7 Alu SINE
AL646020.15 39051 39159 14133953 + B1_Mur2 Alu SINE
AL646020.15 39184 39250 14133954 + RLTR25A ERVK LTR
AL646020.15 39193 39299 14133955 + B1_Mur4 Alu SINE
AL646020.15 39875 40047 14133956 + B2_Mm2 B2 SINE
AL646020.15 40063 40237 14133957 + B2_Mm2 B2 SINE
AL646020.15 40243 40387 14133958 + B1_Mus2 Alu SINE
AL646020.15 40396 40492 14133959 - B3 B2 SINE
AL646020.15 40789 40921 14133960 - B1_Mur2 Alu SINE
AL646020.15 40827 41000 14133961 - B4 B4 SINE
AL646020.15 41001 41064 14133962 - B3A B2 SINE
AL646020.15 41094 41224 14133963 + B1_Mus1 Alu SINE
AL646020.15 41225 41257 14133964 + (CAAAA)n Simple_repeat
AL646020.15 41541 41675 14133965 - B1_Mm Alu SINE
AL646020.15 41584 41693 14133966 - MT2B ERVL LTR
AL646020.15 41924 42093 14133967 + B2_Mm2 B2 SINE
AL646020.15 42243 42378 14133968 - B1F Alu SINE
AL646020.15 42401 42416 14133969 + ORR1B1-int ERVL-MaLR LTR
AL646020.15 42417 42537 14133970 + PB1D9 Alu SINE
AL646020.15 42555 42725 14133971 - B3 B2 SINE
AL646020.15 42739 42847 14133972 - PB1D7 Alu SINE
AL646020.15 42867 43021 14133973 - RSINE1 B4 SINE
AL646020.15 43618 43744 14133974 - B1_Mur1 Alu SINE
AL646020.15 43841 43984 14133975 + Charlie1 hAT-Charlie DNA
AL646020.15 51567 51591 14133976 + AT_rich Low_complexity
AL646020.15 52015 52058 14133977 + GC_rich Low_complexity
AL646020.15 52162 52205 14133978 + GC_rich Low_complexity
AL646020.15 52303 52343 14133979 + GC_rich Low_complexity
AL646020.15 52587 52723 14133980 + (CCG)n
AL646020.15 52729 52862 14133981 + C-rich
AL646020.15 52915 52944 14133982 + GC_rich Low_complexity
AL646020.15 53084 53318 14133983 - ORR1F ERVL-MaLR LTR
AL646020.15 53601 53782 14133984 - B2_Mm1t B2 SINE
AL646020.15 53813 54044 14133985 - B4A B4 SINE
AL646020.15 54522 54708 14133986 - B2_Mm1t B2 SINE
AL646020.15 55700 55915 14133987 - URR1A hAT-Charlie DNA
AL646020.15 56519 56724 14133988 + B4A B4 SINE
AL646020.15 56911 57161 14133989 - L1MC4 L1
AL646020.15 59119 59173 14133990 - ID_B1 B4 SINE
AL646020.15 59176 59530 14133991 - L1MB1 L1
AL646020.15 59571 60639 14133992 + Lx8 L1
AL646020.15 60664 60812 14133993 + B1_Mus2 Alu SINE
AL646020.15 60873 60962 14133994 - PB1D11 Alu SINE
AL646020.15 61472 61964 14133995 - RLTR28 ERVL LTR
AL646020.15 63071 63194 14133996 - B2_Mm2 B2 SINE
AL646020.15 63265 63329 14133997 - B3A B2 SINE
AL646020.15 63330 63356 14133998 + (TG)n
AL646020.15 63357 63453 14133997 - B3A B2 SINE
AL646020.15 63594 63729 14133999 - B1F2 Alu SINE
AL646020.15 63726 63772 14134000 + RMER30 hAT-Charlie DNA
AL646020.15 63833 63878 14134001 - L3 CR1 LINE
AL646020.15 64259 64720 14134002 - RMER4B ERVK LTR
AL646020.15 64732 64845 14134003 - B1_Mus1 Alu SINE
AL646020.15 64776 64915 14134004 - MT2B ERVL LTR
AL646020.15 65040 65183 14134005 + B1_Mur2 Alu SINE
AL646020.15 65216 65434 14134006 + RMER10B ERVL LTR
AL646020.15 65476 65671 14134007 - B2_Mm1t B2 SINE
AL646020.15 65908 65938 14134008 - B2_Mm1t B2 SINE
AL646020.15 65939 65961 14134009 + (TTTA)n
AL646020.15 65962 66120 14134008 - B2_Mm1t B2 SINE
AL646020.15 67403 67435 14134010 + B3 B2 SINE
AL646020.15 67436 67580 14134011 + B1_Mus2 Alu SINE
AL646020.15 67581 67764 14134010 + B3 B2 SINE
AL646020.15 67788 67825 14134012 + (TTTTG)n
AL646020.15 67828 67964 14134013 - B1_Mur3 Alu SINE
AL646020.15 67975 68003 14134014 + (CAAAAA)n Simple_repeat
AL646020.15 68016 68106 14134015 + B1_Mm Alu SINE
AL646020.15 68091 68204 14134016 + Charlie5 hAT-Charlie DNA
AL646020.15 68205 68395 14134017 + B2_Mm1a B2 SINE
AL646020.15 68396 68459 14134016 + Charlie5 hAT-Charlie DNA
AL646020.15 68586 68702 14134018 + ID_B1 B4 SINE
AL646020.15 68703 68769 14134019 - RMER16 ERVK LTR
AL646020.15 68770 68913 14134020 + B1_Mus2 Alu SINE
AL646020.15 68914 69296 14134019 - RMER16 ERVK LTR
AL646020.15 69342 69401 14134021 + ID4_ ID SINE
AL646020.15 69410 69554 14134022 + B1_Mus1 Alu SINE
AL646020.15 69555 69731 14134023 + (GAAA)n Simple_repeat
AL646020.15 70388 70514 14134024 - B3 B2 SINE
AL646020.15 70599 70746 14134025 - B1_Mus1 Alu SINE
AL646020.15 70750 70867 14134026 - PB1D9 Alu SINE
AL646020.15 70880 71075 14134027 + RCHARR1 hAT-Charlie DNA
AL646020.15 71526 71856 14134028 + RCHARR1 hAT-Charlie DNA
AL646020.15 71859 71988 14134029 + B1_Mm Alu SINE
AL646020.15 72008 72254 14134030 - RMER17C ERVK LTR
AL646020.15 72255 72342 14134031 + (GAA)n Simple_repeat
AL646020.15 72343 72542 14134030 - RMER17C ERVK LTR
AL646020.15 72543 72617 14134032 + RCHARR1 hAT-Charlie DNA
AL646020.15 72980 73114 14134033 - RSINE1 B4 SINE
AL646020.15 73128 73340 14134034 - B3 B2 SINE
AL646020.15 73359 73485 14134035 - ID_B1 B4 SINE
AL646020.15 1044 1057 15232747 N DUST
AL646020.15 1228 1259 15232748 N DUST
AL646020.15 1427 1460 15232749 N DUST
AL646020.15 2783 2825 15232750 N DUST
AL646020.15 3408 3446 15232751 N DUST
AL646020.15 3841 3880 15232752 N DUST
AL646020.15 6627 6635 15232753 N DUST
AL646020.15 6826 6839 15232754 N DUST
AL646020.15 7554 7574 15232755 N DUST
AL646020.15 7711 7747 15232756 N DUST
AL646020.15 7904 7931 15232757 N DUST
AL646020.15 8333 8379 15232758 N DUST
AL646020.15 9217 9256 15232759 N DUST
AL646020.15 9339 9367 15232760 N DUST
AL646020.15 9634 9644 15232761 N DUST
AL646020.15 9918 9953 15232762 N DUST
AL646020.15 10410 10436 15232763 N DUST
AL646020.15 11257 11293 15232764 N DUST
AL646020.15 11368 11381 15232765 N DUST
AL646020.15 12059 12071 15232766 N DUST
AL646020.15 12292 12299 15232767 N DUST
AL646020.15 12457 12576 15232768 N DUST
AL646020.15 13014 13087 15232769 N DUST
AL646020.15 14201 14246 15232770 N DUST
AL646020.15 14471 14499 15232771 N DUST
AL646020.15 14536 14589 15232772 N DUST
AL646020.15 14884 14953 15232773 N DUST
AL646020.15 15168 15193 15232774 N DUST
AL646020.15 15611 15626 15232775 N DUST
AL646020.15 15727 15753 15232776 N DUST
AL646020.15 15964 15973 15232777 N DUST
AL646020.15 16351 16363 15232778 N DUST
AL646020.15 16721 16755 15232779 N DUST
AL646020.15 16781 16789 15232780 N DUST
AL646020.15 17572 17619 15232781 N DUST
AL646020.15 18078 18104 15232782 N DUST
AL646020.15 18348 18364 15232783 N DUST
AL646020.15 18639 18683 15232784 N DUST
AL646020.15 18993 19002 15232785 N DUST
AL646020.15 19111 19131 15232786 N DUST
AL646020.15 19360 19367 15232787 N DUST
AL646020.15 19821 19887 15232788 N DUST
AL646020.15 21007 21020 15232789 N DUST
AL646020.15 21154 21217 15232790 N DUST
AL646020.15 21960 21966 15232791 N DUST
AL646020.15 22026 22053 15232792 N DUST
AL646020.15 22300 22326 15232793 N DUST
AL646020.15 22602 22614 15232794 N DUST
AL646020.15 22624 22630 15232795 N DUST
AL646020.15 23442 23455 15232796 N DUST
AL646020.15 23863 23876 15232797 N DUST
AL646020.15 23943 23964 15232798 N DUST
AL646020.15 25192 25281 15232799 N DUST
AL646020.15 25853 25981 15232800 N DUST
AL646020.15 26203 26268 15232801 N DUST
AL646020.15 26730 26747 15232802 N DUST
AL646020.15 27854 27872 15232803 N DUST
AL646020.15 28104 28178 15232804 N DUST
AL646020.15 28648 28659 15232805 N DUST
AL646020.15 28866 28886 15232806 N DUST
AL646020.15 28889 28967 15232807 N DUST
AL646020.15 29345 29380 15232808 N DUST
AL646020.15 29402 29413 15232809 N DUST
AL646020.15 29537 29544 15232810 N DUST
AL646020.15 29585 29632 15232811 N DUST
AL646020.15 29716 29728 15232812 N DUST
AL646020.15 30433 30442 15232813 N DUST
AL646020.15 30843 30915 15232814 N DUST
AL646020.15 31462 31558 15232815 N DUST
AL646020.15 32058 32084 15232816 N DUST
AL646020.15 32297 32332 15232817 N DUST
AL646020.15 33276 33282 15232818 N DUST
AL646020.15 34011 34017 15232819 N DUST
AL646020.15 34309 34398 15232820 N DUST
AL646020.15 34491 34507 15232821 N DUST
AL646020.15 34752 34801 15232822 N DUST
AL646020.15 35287 35295 15232823 N DUST
AL646020.15 35483 35503 15232824 N DUST
AL646020.15 35640 35646 15232825 N DUST
AL646020.15 35657 35705 15232826 N DUST
AL646020.15 35812 35850 15232827 N DUST
AL646020.15 35886 35910 15232828 N DUST
AL646020.15 36322 36371 15232829 N DUST
AL646020.15 36770 36790 15232830 N DUST
AL646020.15 36847 36886 15232831 N DUST
AL646020.15 37235 37241 15232832 N DUST
AL646020.15 37834 37848 15232833 N DUST
AL646020.15 37932 37955 15232834 N DUST
AL646020.15 38237 38303 15232835 N DUST
AL646020.15 38768 38774 15232836 N DUST
AL646020.15 39288 39362 15232837 N DUST
AL646020.15 40021 40047 15232838 N DUST
AL646020.15 40231 40237 15232839 N DUST
AL646020.15 40377 40389 15232840 N DUST
AL646020.15 41225 41297 15232841 N DUST
AL646020.15 41541 41549 15232842 N DUST
AL646020.15 42403 42409 15232843 N DUST
AL646020.15 42524 42543 15232844 N DUST
AL646020.15 43617 43629 15232845 N DUST
AL646020.15 44871 44877 15232846 N DUST
AL646020.15 45411 45419 15232847 N DUST
AL646020.15 45493 45499 15232848 N DUST
AL646020.15 46393 46401 15232849 N DUST
AL646020.15 46585 46594 15232850 N DUST
AL646020.15 46702 46766 15232851 N DUST
AL646020.15 48197 48257 15232852 N DUST
AL646020.15 48363 48371 15232853 N DUST
AL646020.15 48508 48517 15232854 N DUST
AL646020.15 48923 48929 15232855 N DUST
AL646020.15 49190 49224 15232856 N DUST
AL646020.15 49653 49693 15232857 N DUST
AL646020.15 49798 49807 15232858 N DUST
AL646020.15 49923 50009 15232859 N DUST
AL646020.15 50913 50922 15232860 N DUST
AL646020.15 51052 51059 15232861 N DUST
AL646020.15 51580 51590 15232862 N DUST
AL646020.15 52015 52079 15232863 N DUST
AL646020.15 52163 52203 15232864 N DUST
AL646020.15 52576 52943 15232865 N DUST
AL646020.15 53482 53495 15232866 N DUST
AL646020.15 53601 53613 15232867 N DUST
AL646020.15 53950 53966 15232868 N DUST
AL646020.15 54522 54529 15232869 N DUST
AL646020.15 54921 54930 15232870 N DUST
AL646020.15 55134 55140 15232871 N DUST
AL646020.15 55568 55574 15232872 N DUST
AL646020.15 55877 55888 15232873 N DUST
AL646020.15 57578 57584 15232874 N DUST
AL646020.15 58320 58326 15232875 N DUST
AL646020.15 58405 58414 15232876 N DUST
AL646020.15 60800 60832 15232877 N DUST
AL646020.15 61159 61167 15232878 N DUST
AL646020.15 62060 62082 15232879 N DUST
AL646020.15 62648 62710 15232880 N DUST
AL646020.15 63267 63300 15232881 N DUST
AL646020.15 63330 63356 15232882 N DUST
AL646020.15 63974 63987 15232883 N DUST
AL646020.15 64708 64741 15232884 N DUST
AL646020.15 65169 65202 15232885 N DUST
AL646020.15 65470 65489 15232886 N DUST
AL646020.15 65898 65965 15232887 N DUST
AL646020.15 67570 67591 15232888 N DUST
AL646020.15 67772 67850 15232889 N DUST
AL646020.15 67973 68003 15232890 N DUST
AL646020.15 68105 68125 15232891 N DUST
AL646020.15 68360 68395 15232892 N DUST
AL646020.15 68756 68768 15232893 N DUST
AL646020.15 68905 68924 15232894 N DUST
AL646020.15 69545 69730 15232895 N DUST
AL646020.15 70563 70610 15232896 N DUST
AL646020.15 71978 72016 15232897 N DUST
AL646020.15 72165 72342 15232898 N DUST
AL646020.15 72360 72438 15232899 N DUST
AL646020.15 72624 72641 15232900 N DUST
AL646020.15 73117 73137 15232901 N DUST
AL646020.15 73308 73314 15232902 N DUST
AL646020.15 73344 73376 15232903 N DUST
AL646047.9 505 704 14118636 - RMER17C ERVK LTR
AL646047.9 705 779 14118638 + RCHARR1 hAT-Charlie DNA
AL646047.9 786 809 14118639 + (C)n
AL646047.9 417 504 14118637 + (GAA)n Simple_repeat
AL646047.9 170 416 14118636 - RMER17C ERVK LTR
AL646047.9 7117 7150 14118662 + (CAAA)n Simple_repeat
AL646047.9 7151 7214 14118660 + RSINE1 B4 SINE
AL646047.9 7216 7248 14118663 + (CA)n Simple_repeat
AL646047.9 7330 7391 14118664 - URR1A hAT-Charlie DNA
AL646047.9 7396 7712 14118665 - ORR1A2 ERVL-MaLR LTR
AL646047.9 7739 7926 14118666 + B2_Mm2 B2 SINE
AL646047.9 7928 8070 14118667 - B1_Mus1 Alu SINE
AL646047.9 8073 8141 14118664 - URR1A hAT-Charlie DNA
AL646047.9 8142 8328 14118668 + B2_Mm2 B2 SINE
AL646047.9 8329 8393 14118664 - URR1A hAT-Charlie DNA
AL646047.9 8551 8759 14118669 + ID_B1 B4 SINE
AL646047.9 8765 8962 14118670 + B3A B2 SINE
AL646047.9 9017 9039 14118671 + AT_rich Low_complexity
AL646047.9 9046 9178 14118672 + B1_Mur1 Alu SINE
AL646047.9 9493 9571 14118673 + PB1D11 Alu SINE
AL646047.9 9517 9576 14118674 + B4 B4 SINE
AL646047.9 9577 9656 14118675 + B1_Mur4 Alu SINE
AL646047.9 9657 9698 14118674 + B4 B4 SINE
AL646047.9 9704 10092 14118676 - RLTR49 ERVK LTR
AL646047.9 10126 10177 14118677 + (TG)n
AL646047.9 10178 10358 14118676 - RLTR49 ERVK LTR
AL646047.9 10360 10456 14118678 + RSINE1 B4 SINE
AL646047.9 10569 10643 14118679 + (TTATA)n
AL646047.9 10650 10789 14118680 - B1_Mus1 Alu SINE
AL646047.9 10657 10805 14118681 - B4A B4 SINE
AL646047.9 10812 11074 14118682 + RLTR19A ERVK LTR
AL646047.9 11076 11304 14118683 - RLTR25B ERVK LTR
AL646047.9 13603 13957 14118684 + MTD ERVL-MaLR LTR
AL646047.9 14030 14080 14118685 + (TG)n
AL646047.9 14518 14552 14118686 + (TTTTTG)n
AL646047.9 14553 14698 14118687 - B1_Mus1 Alu SINE
AL646047.9 17707 17811 14118688 + MIR MIR SINE
AL646047.9 21 150 14118635 + B1_Mm Alu SINE
AL646047.9 6875 6977 14118660 + RSINE1 B4 SINE
AL646047.9 6591 6871 14118659 + L1M4 L1
AL646047.9 6376 6528 14118658 + B3 B2 SINE
AL646047.9 6226 6329 14118656 + B1F1 Alu SINE
AL646047.9 5881 6225 14118657 + ORR1A0 ERVL-MaLR LTR
AL646047.9 5846 5880 14118656 + B1F1 Alu SINE
AL646047.9 5703 5781 14118655 + ID4_ ID SINE
AL646047.9 5586 5682 14118654 + PB1 Alu SINE
AL646047.9 5491 5578 14118653 + BC1_Mm ID SINE
AL646047.9 4949 4986 14118652 + A-rich
AL646047.9 4805 4948 14118651 + B1_Mus2 Alu SINE
AL646047.9 4681 4804 14118650 + (GAAA)n Simple_repeat
AL646047.9 3744 4044 14118649 - ORR1C2 ERVL-MaLR LTR
AL646047.9 3648 3791 14118648 - B2_Mm1t B2 SINE
AL646047.9 3467 3581 14118647 - B2_Mm2 B2 SINE
AL646047.9 3354 3463 14118646 - ORR1C1 ERVL-MaLR LTR
AL646047.9 2229 2320 14118645 - B2_Mm1t B2 SINE
AL646047.9 2075 2215 14118644 - B1_Mus1 Alu SINE
AL646047.9 2051 2071 14118643 + (T)n
AL646047.9 1522 1648 14118642 - ID_B1 B4 SINE
AL646047.9 1291 1503 14118641 - B3 B2 SINE
AL646047.9 1143 1277 14118640 - RSINE1 B4 SINE
AL646047.9 6978 7116 14118661 + B1_Mus1 Alu SINE
AL646047.9 18175 18320 14118689 + MTD ERVL-MaLR LTR
AL646047.9 18321 18505 14118690 - B3 B2 SINE
AL646047.9 18506 18777 14118689 + MTD ERVL-MaLR LTR
AL646047.9 18844 18925 14118691 + PB1D10 Alu SINE
AL646047.9 18940 19022 14118692 + ID4 ID SINE
AL646047.9 19032 19088 14118693 + GA-rich
AL646047.9 19192 19324 14118694 - B1_Mur2 Alu SINE
AL646047.9 20353 20502 14118695 + B1_Mur3 Alu SINE
AL646047.9 20503 20541 14118696 + (CAAAA)n Simple_repeat
AL646047.9 20541 20626 14118697 + GA-rich
AL646047.9 23596 23642 14118698 + CT-rich
AL646047.9 26200 26275 14118699 + (TTTC)n
AL646047.9 26352 26413 14118700 + (TTTC)n
AL646047.9 26416 26545 14118701 - B1_Mus2 Alu SINE
AL646047.9 26575 26726 14118702 - B3 B2 SINE
AL646047.9 26775 26912 14118703 - B1_Mm Alu SINE
AL646047.9 27453 27480 14118704 + (TTTTG)n
AL646047.9 27482 27624 14118705 - B1_Mus1 Alu SINE
AL646047.9 28042 28128 14118706 - MER58B hAT-Charlie DNA
AL646047.9 28616 28784 14118707 - B2_Mm2 B2 SINE
AL646047.9 28801 28967 14118708 - B2_Mm1a B2 SINE
AL646047.9 29299 29472 14118709 - B2_Mm2 B2 SINE
AL646047.9 29517 29654 14118710 - B1_Mus1 Alu SINE
AL646047.9 29655 29682 14118711 - ID_B1 B4 SINE
AL646047.9 29656 29756 14118712 - B3 B2 SINE
AL646047.9 29766 29870 14118713 - B1_Mur4 Alu SINE
AL646047.9 29871 29942 14118714 - ID_B1 B4 SINE
AL646047.9 30289 30366 14118715 - PB1D7 Alu SINE
AL646047.9 30571 30755 14118716 - B2_Mm2 B2 SINE
AL646047.9 31180 31285 14118717 + ID_B1 B4 SINE
AL646047.9 31286 31310 14118718 + B1F Alu SINE
AL646047.9 31587 31675 14118719 + RSINE1 B4 SINE
AL646047.9 31705 31862 14118720 + B2_Mm2 B2 SINE
AL646047.9 31863 32274 14118721 - MMERGLN_LTR ERV1 LTR
AL646047.9 32275 32290 14118720 + B2_Mm2 B2 SINE
AL646047.9 32296 32337 14118722 + B1_Mur3 Alu SINE
AL646047.9 32435 32580 14118723 + B1_Mus2 Alu SINE
AL646047.9 32614 32687 14118724 - B4A B4 SINE
AL646047.9 32752 32867 14118725 + PB1D9 Alu SINE
AL646047.9 34135 34270 14118726 - B1_Mus1 Alu SINE
AL646047.9 34439 34489 14118727 - ID2 ID SINE
AL646047.9 34619 34782 14118728 + RSINE1 B4 SINE
AL646047.9 34822 34941 14118729 + B3 B2 SINE
AL646047.9 35099 35234 14118730 + RSINE1 B4 SINE
AL646047.9 35239 35265 14118731 + AT_rich Low_complexity
AL646047.9 35266 35454 14118732 + B2_Mm1a B2 SINE
AL646047.9 35455 35469 14118733 + AT_rich Low_complexity
AL646047.9 35470 35660 14118734 + B2_Mm1a B2 SINE
AL646047.9 35677 35704 14118735 + AT_rich Low_complexity
AL646047.9 35716 36056 14118736 - MTC ERVL-MaLR LTR
AL646047.9 36057 36203 14118737 - B1_Mm Alu SINE
AL646047.9 36204 36282 14118736 - MTC ERVL-MaLR LTR
AL646047.9 36272 36358 14118738 + RLTR20A4 ERVK LTR
AL646047.9 36359 36442 14118739 + (TG)n
AL646047.9 36443 36922 14118740 + IAPLTR2_Mm ERVK LTR
AL646047.9 36946 37611 14118740 + IAPEz-int ERVK LTR
AL646047.9 37612 37674 14118740 + IAPEz-int ERVK LTR
AL646047.9 37680 37925 14118740 + IAPEz-int ERVK LTR
AL646047.9 37923 38045 14118741 + IAPEY4_I-int ERVK
AL646047.9 38048 40409 14118742 + IAPEz-int ERVK LTR
AL646047.9 40410 40889 14118742 + IAPLTR2_Mm ERVK LTR
AL646047.9 40891 40925 14118743 + (TG)n
AL646047.9 40926 41064 14118744 - B3 B2 SINE
AL646047.9 41065 41099 14118745 + (TCC)n
AL646047.9 41114 41181 14118746 - Lx5c L1
AL646047.9 41183 41210 14118747 - BC1_Mm ID SINE
AL646047.9 41211 41285 14118748 - ID ID
AL646047.9 41309 41361 14118749 + B3 B2 SINE
AL646047.9 41370 41545 14118750 + B3A B2 SINE
AL646047.9 41549 41740 14118751 + B2_Mm1a B2 SINE
AL646047.9 41745 41818 14118752 + B1_Mus1 Alu SINE
AL646047.9 41819 41861 14118753 + (TAAA)n Simple_repeat
AL646047.9 41873 41925 14118754 + B1_Mus1 Alu SINE
AL646047.9 41928 41957 14118755 + (TAAA)n Simple_repeat
AL646047.9 42082 42266 14118756 + B2_Mm1a B2 SINE
AL646047.9 42506 42692 14118757 + B2_Mm2 B2 SINE
AL646047.9 42698 42843 14118758 + B1_Mm Alu SINE
AL646047.9 42906 42975 14118759 - ID_B1 B4 SINE
AL646047.9 42973 43048 14118760 + ORR1D2 ERVL-MaLR LTR
AL646047.9 43049 43210 14118761 + B2_Mm2 B2 SINE
AL646047.9 43211 43360 14118760 + ORR1D2 ERVL-MaLR LTR
AL646047.9 43414 43629 14118762 - ID_B1 B4 SINE
AL646047.9 43981 43998 14118763 - B2_Mm2 B2 SINE
AL646047.9 43999 44033 14118764 + (TTTA)n
AL646047.9 44034 44190 14118763 - B2_Mm2 B2 SINE
AL646047.9 44196 44295 14118765 - B1_Mur2 Alu SINE
AL646047.9 44348 44381 14118766 + (GA)n Simple_repeat
AL646047.9 44382 44443 14118767 + (GAGAA)n Simple_repeat
AL646047.9 44558 44846 14118768 + MER89 ERV1 LTR
AL646047.9 45117 45196 14118769 - PB1 Alu SINE
AL646047.9 45215 45432 14118770 + MLTR18D_MM ERVK LTR
AL646047.9 45434 45592 14118771 + B2_Mm1a B2 SINE
AL646047.9 45594 45632 14118772 + (TAA)n Simple_repeat
AL646047.9 45634 45714 14118770 + MLTR18D_MM ERVK LTR
AL646047.9 45717 45827 14118773 - B2_Mm2 B2 SINE
AL646047.9 45894 46100 14118774 - B2_Mm1t B2 SINE
AL646047.9 46101 46491 14118775 + MLTR18D_MM ERVK LTR
AL646047.9 46529 46657 14118776 - ID_B1 B4 SINE
AL646047.9 46585 46820 14118768 + MER89 ERV1 LTR
AL646047.9 46920 47118 14118777 + ID_B1 B4 SINE
AL646047.9 47498 47639 14118778 + B1_Mus2 Alu SINE
AL646047.9 47642 47670 14118779 + (CAAAA)n Simple_repeat
AL646047.9 47685 47839 14118780 - MTD ERVL-MaLR LTR
AL646047.9 47840 47864 14118781 + (TTG)n
AL646047.9 47865 47875 14118780 - MTD ERVL-MaLR LTR
AL646047.9 47876 48052 14118782 - B3 B2 SINE
AL646047.9 48053 48162 14118780 - MTD ERVL-MaLR LTR
AL646047.9 48163 48405 14118783 + B3 B2 SINE
AL646047.9 48406 48547 14118780 - MTD ERVL-MaLR LTR
AL646047.9 49358 49474 14118784 + Lx8 L1
AL646047.9 49481 49587 14118785 + B1_Mus1 Alu SINE
AL646047.9 49625 49694 14118786 + ID_B1 B4 SINE
AL646047.9 49695 49773 14118787 + B1_Mm Alu SINE
AL646047.9 49802 49921 14118784 + Lx8 L1
AL646047.9 50012 50159 14118788 - B1_Mus1 Alu SINE
AL646047.9 50317 50496 14118789 + B3 B2 SINE
AL646047.9 50984 51111 14118790 - B1_Mus1 Alu SINE
AL646047.9 51229 51314 14118791 - PB1D10 Alu SINE
AL646047.9 51835 51900 14118792 + GC_rich Low_complexity
AL646047.9 51936 51967 14118793 + GC_rich Low_complexity
AL646047.9 52058 52092 14118794 + (CGGG)n Simple_repeat
AL646047.9 53326 53471 14118795 - B1_Mus2 Alu SINE
AL646047.9 53741 53878 14118796 - B1_Mur3 Alu SINE
AL646047.9 53885 54053 14118797 - B2_Mm1t B2 SINE
AL646047.9 54062 54234 14118798 - B2_Mm2 B2 SINE
AL646047.9 54315 54500 14118799 - B2_Mm1t B2 SINE
AL646047.9 54579 54701 14118800 - B1_Mur3 Alu SINE
AL646047.9 54796 55012 14118801 + ID_B1 B4 SINE
AL646047.9 55511 55665 14118802 - B3 B2 SINE
AL646047.9 55666 55821 14118803 - L1_Mur2 L1
AL646047.9 55822 55871 14118802 - B3 B2 SINE
AL646047.9 55872 56065 14118804 - B3A B2 SINE
AL646047.9 56166 56355 14118805 - ID_B1 B4 SINE
AL646047.9 56373 56516 14118806 - B1_Mus2 Alu SINE
AL646047.9 56528 56712 14118807 - B2_Mm1a B2 SINE
AL646047.9 56724 56943 14118808 - ID_B1 B4 SINE
AL646047.9 57011 57056 14118809 + (TG)n
AL646047.9 57058 57125 14118810 - ID ID
AL646047.9 57131 57236 14118811 - PB1D9 Alu SINE
AL646047.9 57246 57431 14118812 - B2_Mm1t B2 SINE
AL646047.9 57459 57637 14118813 - B3 B2 SINE
AL646047.9 57727 57826 14118814 + B3A B2 SINE
AL646047.9 58254 58379 14118815 + MLT1B ERVL-MaLR LTR
AL646047.9 58380 58507 14118816 - B1F Alu SINE
AL646047.9 58508 58706 14118815 + MLT1B ERVL-MaLR LTR
AL646047.9 58739 58884 14118817 - B1_Mus2 Alu SINE
AL646047.9 58939 59044 14118818 + (TCTA)n
AL646047.9 59055 59182 14118819 - B1_Mus2 Alu SINE
AL646047.9 59070 59199 14118820 - MT2B ERVL LTR
AL646047.9 59307 59582 14118821 - B4A B4 SINE
AL646047.9 59730 59859 14118822 - B1F1 Alu SINE
AL646047.9 60046 60168 14118823 - B1_Mur1 Alu SINE
AL646047.9 60070 60198 14118824 - MT2B ERVL LTR
AL646047.9 60265 60370 14118825 - BC1_Mm ID SINE
AL646047.9 60917 61046 14118826 + B1_Mur1 Alu SINE
AL646047.9 61047 61257 14118827 + B3 B2 SINE
AL646047.9 61496 61646 14118828 - B1_Mur4 Alu SINE
AL646047.9 61682 61899 14118829 - B3 B2 SINE
AL646047.9 62040 62260 14118830 - Lx8 L1
AL646047.9 62261 62452 14118831 + B2_Mm2 B2 SINE
AL646047.9 62453 62499 14118830 - Lx8 L1
AL646047.9 62547 62673 14118832 + B3 B2 SINE
AL646047.9 62733 62872 14118830 - Lx8 L1
AL646047.9 62875 62994 14118833 - B1F Alu SINE
AL646047.9 63114 63365 14118834 - Lx8b L1
AL646047.9 63412 63457 14118835 - B1F2 Alu SINE
AL646047.9 63671 63749 14118836 + ID4_ ID SINE
AL646047.9 65143 65350 14118837 + MER47A TcMar-Tigger DNA
AL646047.9 65483 65592 14118838 - MIR3 MIR SINE
AL646047.9 66883 67031 14118839 - ID_B1 B4 SINE
AL646047.9 67156 67275 14118840 - PB1D9 Alu SINE
AL646047.9 68125 68314 14118841 + B2_Mm2 B2 SINE
AL646047.9 69490 69585 14118842 + (TCCC)n
AL646047.9 69586 69707 14118843 - B1F2 Alu SINE
AL646047.9 69708 69759 14118844 - MT2B ERVL LTR
AL646047.9 69759 69869 14118845 + PB1D7 Alu SINE
AL646047.9 69880 70074 14118846 + B2_Mm1t B2 SINE
AL646047.9 70212 70270 14118847 - PB1D11 Alu SINE
AL646047.9 70552 70850 14118848 - MER44D TcMar-Tigger DNA
AL646047.9 72476 72622 14118849 + B1_Mm Alu SINE
AL646047.9 72704 72746 14118850 + (TTTG)n
AL646047.9 72747 72875 14118851 - B1_Mus2 Alu SINE
AL646047.9 72856 73050 14118852 + ID_B1 B4 SINE
AL646047.9 73171 73229 14118853 + RLTR20A4 ERVK LTR
AL646047.9 76359 76504 14118854 - B1_Mus1 Alu SINE
AL646047.9 76505 76654 14118855 - B3 B2 SINE
AL646047.9 76663 76774 14118856 - PB1D10 Alu SINE
AL646047.9 76851 77173 14118857 - MTEa ERVL-MaLR LTR
AL646047.9 77485 77508 14118858 + AT_rich Low_complexity
AL646047.9 77516 77558 14118859 + (TG)n
AL646047.9 77646 77736 14118860 + B4 B4 SINE
AL646047.9 77744 78020 14118861 + (CA)n Simple_repeat
AL646047.9 78174 78252 14118862 + L1MD L1
AL646047.9 78431 79042 14118862 + L1MD L1
AL646047.9 79202 79229 14118863 + (CA)n Simple_repeat
AL646047.9 79230 79292 14118864 + (GA)n Simple_repeat
AL646047.9 79318 79463 14118865 + B1_Mus2 Alu SINE
AL646047.9 79464 79492 14118866 + (A)n Simple_repeat
AL646047.9 79493 79528 14118867 + (TGGA)n Simple_repeat
AL646047.9 79536 79660 14118868 + PB1 Alu SINE
AL646047.9 79720 79864 14118869 + B1_Mus1 Alu SINE
AL646047.9 79865 79896 14118870 + (A)n Simple_repeat
AL646047.9 80057 80194 14118871 - B1_Mus1 Alu SINE
AL646047.9 80089 80211 14118872 - ORR1B1-int ERVL-MaLR LTR
AL646047.9 80313 80479 14118873 + B2_Mm2 B2 SINE
AL646047.9 80499 80627 14118874 + B1_Mur4 Alu SINE
AL646047.9 80628 80673 14118875 + (TG)n
AL646047.9 81004 81084 14118876 - ERV3-16A3_I-int ERVL
AL646047.9 81423 81536 14118877 + B1F Alu SINE
AL646047.9 81590 81749 14118878 + B3A B2 SINE
AL646047.9 81750 81849 14118879 - B1_Mur3 Alu SINE
AL646047.9 81850 81987 14118880 - B1_Mus1 Alu SINE
AL646047.9 81988 82064 14118879 - B1_Mur3 Alu SINE
AL646047.9 81989 82075 14118881 - B4A B4 SINE
AL646047.9 82106 82243 14118882 + B1_Mm Alu SINE
AL646047.9 82244 82275 14118883 + (CAAAA)n Simple_repeat
AL646047.9 82494 82717 14118884 - MTC ERVL-MaLR LTR
AL646047.9 82718 82871 14118885 - B1_Mus1 Alu SINE
AL646047.9 82872 83061 14118884 - MTC ERVL-MaLR LTR
AL646047.9 83074 83140 14118886 + AT_rich Low_complexity
AL646047.9 83172 83718 14118887 - Lx8 L1
AL646047.9 83826 83964 14118888 + RSINE1 B4 SINE
AL646047.9 84028 84146 14118889 - PB1D9 Alu SINE
AL646047.9 84200 84463 14118890 - B4 B4 SINE
AL646047.9 84465 84547 14118891 - PB1D10 Alu SINE
AL646047.9 84567 84662 14118892 - L1MCa L1
AL646047.9 84663 84691 14118893 - B2_Mm2 B2 SINE
AL646047.9 84692 84840 14118894 + B1_Mus2 Alu SINE
AL646047.9 84841 85021 14118893 - B2_Mm2 B2 SINE
AL646047.9 85022 85083 14118892 - L1MCa L1
AL646047.9 85095 85221 14118892 - L1MCa L1
AL646047.9 85319 85572 14118895 - B4A B4 SINE
AL646047.9 85650 85748 14118896 + PB1D9 Alu SINE
AL646047.9 85807 85867 14118897 - ID4 ID SINE
AL646047.9 86005 86190 14118898 - B2_Mm2 B2 SINE
AL646047.9 86266 86341 14118892 - L1MCa L1
AL646047.9 86357 86469 14118899 + B1_Mur2 Alu SINE
AL646047.9 86569 86815 14118900 - B4A B4 SINE
AL646047.9 87049 87290 14118892 - L1MCa L1
AL646047.9 89198 89221 14118910 + (CA)n Simple_repeat
AL646047.9 89236 89283 14118911 + ID_B1 B4 SINE
AL646047.9 89284 89355 14118912 + B1_Mus1 Alu SINE
AL646047.9 90410 90426 14118913 + ID_B1 B4 SINE
AL646047.9 90427 90519 14118914 + B1_Mur2 Alu SINE
AL646047.9 90690 90803 14118915 - PB1D9 Alu SINE
AL646047.9 91513 91637 14118916 - B1F1 Alu SINE
AL646047.9 91641 91892 14118917 - ORR1G ERVL-MaLR LTR
AL646047.9 91973 92042 14118918 + MADE2 TcMar-Mariner DNA
AL646047.9 92997 93024 14118919 + (TTTG)n
AL646047.9 93029 93161 14118920 - B1_Mus1 Alu SINE
AL646047.9 93187 93321 14118921 - ID_B1 B4 SINE
AL646047.9 89102 89159 14118909 + B3 B2 SINE
AL646047.9 88728 88862 14118908 - MLT1A1 ERVL-MaLR LTR
AL646047.9 88526 88717 14118907 + B3 B2 SINE
AL646047.9 88181 88475 14118906 - ORR1A2 ERVL-MaLR LTR
AL646047.9 88056 88168 14118905 + B3 B2 SINE
AL646047.9 87935 88037 14118904 + B1F1 Alu SINE
AL646047.9 87808 87965 14118903 - B3 B2 SINE
AL646047.9 87678 87754 14118892 - L1MCa L1
AL646047.9 87531 87677 14118902 - B1_Mus1 Alu SINE
AL646047.9 87454 87508 14118901 - ORR1B1 ERVL-MaLR LTR
AL646047.9 6578 6592 15357546 N DUST
AL646047.9 12473 12481 15357557 N DUST
AL646047.9 12599 12606 15357558 N DUST
AL646047.9 12660 12666 15357559 N DUST
AL646047.9 13689 13702 15357560 N DUST
AL646047.9 14030 14080 15357561 N DUST
AL646047.9 14512 14563 15357562 N DUST
AL646047.9 16274 16287 15357563 N DUST
AL646047.9 19008 19088 15357564 N DUST
AL646047.9 19172 19202 15357565 N DUST
AL646047.9 19424 19430 15357566 N DUST
AL646047.9 20493 20626 15357567 N DUST
AL646047.9 23584 23645 15357568 N DUST
AL646047.9 24503 24524 15357569 N DUST
AL646047.9 26140 26283 15357570 N DUST
AL646047.9 26345 26421 15357571 N DUST
AL646047.9 26733 26785 15357572 N DUST
AL646047.9 27453 27492 15357573 N DUST
AL646047.9 28616 28646 15357574 N DUST
AL646047.9 28799 28812 15357575 N DUST
AL646047.9 28993 29006 15357576 N DUST
AL646047.9 29081 29092 15357577 N DUST
AL646047.9 29298 29306 15357578 N DUST
AL646047.9 29495 29522 15357579 N DUST
AL646047.9 30750 30761 15357580 N DUST
AL646047.9 31961 31967 15357581 N DUST
AL646047.9 32572 32595 15357582 N DUST
AL646047.9 33428 33436 15357583 N DUST
AL646047.9 34028 34051 15357584 N DUST
AL646047.9 34109 34144 15357585 N DUST
AL646047.9 34487 34532 15357586 N DUST
AL646047.9 35256 35262 15357587 N DUST
AL646047.9 35441 35466 15357588 N DUST
AL646047.9 6515 6543 15357545 N DUST
AL646047.9 5683 5691 15357544 N DUST
AL646047.9 4938 4986 15357543 N DUST
AL646047.9 4681 4804 15357542 N DUST
AL646047.9 3458 3501 15357541 N DUST
AL646047.9 2228 2241 15357540 N DUST
AL646047.9 2051 2071 15357539 N DUST
AL646047.9 1507 1539 15357538 N DUST
AL646047.9 1471 1477 15357537 N DUST
AL646047.9 1280 1300 15357536 N DUST
AL646047.9 786 804 15357535 N DUST
AL646047.9 522 600 15357534 N DUST
AL646047.9 327 504 15357533 N DUST
AL646047.9 140 178 15357532 N DUST
AL646047.9 6961 6967 15357547 N DUST
AL646047.9 7115 7150 15357548 N DUST
AL646047.9 7183 7243 15357549 N DUST
AL646047.9 7919 7934 15357550 N DUST
AL646047.9 8295 8336 15357551 N DUST
AL646047.9 9179 9185 15357552 N DUST
AL646047.9 10087 10178 15357553 N DUST
AL646047.9 10444 10456 15357554 N DUST
AL646047.9 10541 10648 15357555 N DUST
AL646047.9 10655 10662 15357556 N DUST
AL646047.9 35626 35660 15357589 N DUST
AL646047.9 36047 36068 15357590 N DUST
AL646047.9 36308 36445 15357591 N DUST
AL646047.9 36666 36716 15357592 N DUST
AL646047.9 37484 37516 15357593 N DUST
AL646047.9 40633 40683 15357594 N DUST
AL646047.9 40891 40977 15357595 N DUST
AL646047.9 41063 41101 15357596 N DUST
AL646047.9 41134 41153 15357597 N DUST
AL646047.9 41157 41165 15357598 N DUST
AL646047.9 41506 41530 15357599 N DUST
AL646047.9 41533 41539 15357600 N DUST
AL646047.9 41728 41740 15357601 N DUST
AL646047.9 41817 41862 15357602 N DUST
AL646047.9 41921 41954 15357603 N DUST
AL646047.9 42254 42266 15357604 N DUST
AL646047.9 42679 42685 15357605 N DUST
AL646047.9 42832 42862 15357606 N DUST
AL646047.9 42882 42917 15357607 N DUST
AL646047.9 43197 43215 15357608 N DUST
AL646047.9 43414 43420 15357609 N DUST
AL646047.9 43958 44037 15357610 N DUST
AL646047.9 44347 44447 15357611 N DUST
AL646047.9 45035 45132 15357612 N DUST
AL646047.9 45594 45628 15357613 N DUST
AL646047.9 45717 45723 15357614 N DUST
AL646047.9 47635 47673 15357615 N DUST
AL646047.9 47840 47920 15357616 N DUST
AL646047.9 48314 48402 15357617 N DUST
AL646047.9 48415 48424 15357618 N DUST
AL646047.9 49763 49803 15357619 N DUST
AL646047.9 50467 50507 15357620 N DUST
AL646047.9 50606 50623 15357621 N DUST
AL646047.9 50966 50994 15357622 N DUST
AL646047.9 51556 51566 15357623 N DUST
AL646047.9 51829 51898 15357624 N DUST
AL646047.9 52028 52117 15357625 N DUST
AL646047.9 53320 53335 15357626 N DUST
AL646047.9 53507 53515 15357627 N DUST
AL646047.9 53878 53910 15357628 N DUST
AL646047.9 54050 54061 15357629 N DUST
AL646047.9 54306 54326 15357630 N DUST
AL646047.9 55469 55526 15357631 N DUST
AL646047.9 55664 55697 15357632 N DUST
AL646047.9 55712 55773 15357633 N DUST
AL646047.9 56369 56381 15357634 N DUST
AL646047.9 56534 56540 15357635 N DUST
AL646047.9 56964 57056 15357636 N DUST
AL646047.9 57252 57258 15357637 N DUST
AL646047.9 57803 57814 15357638 N DUST
AL646047.9 58724 58750 15357639 N DUST
AL646047.9 58954 59044 15357640 N DUST
AL646047.9 59196 59209 15357641 N DUST
AL646047.9 59457 59491 15357642 N DUST
AL646047.9 60270 60287 15357643 N DUST
AL646047.9 60376 60421 15357644 N DUST
AL646047.9 61247 61259 15357645 N DUST
AL646047.9 61462 61526 15357646 N DUST
AL646047.9 61654 61720 15357647 N DUST
AL646047.9 62438 62454 15357648 N DUST
AL646047.9 62697 62712 15357649 N DUST
AL646047.9 63210 63216 15357650 N DUST
AL646047.9 63395 63401 15357651 N DUST
AL646047.9 63951 63957 15357652 N DUST
AL646047.9 67044 67062 15357653 N DUST
AL646047.9 67155 67183 15357654 N DUST
AL646047.9 67271 67305 15357655 N DUST
AL646047.9 68057 68063 15357656 N DUST
AL646047.9 68302 68325 15357657 N DUST
AL646047.9 68740 68756 15357658 N DUST
AL646047.9 68972 68978 15357659 N DUST
AL646047.9 69489 69591 15357660 N DUST
AL646047.9 70035 70075 15357661 N DUST
AL646047.9 72156 72163 15357662 N DUST
AL646047.9 72460 72466 15357663 N DUST
AL646047.9 72612 72637 15357664 N DUST
AL646047.9 72704 72741 15357665 N DUST
AL646047.9 73154 73218 15357666 N DUST
AL646047.9 76350 76362 15357667 N DUST
AL646047.9 77489 77509 15357668 N DUST
AL646047.9 77520 77558 15357669 N DUST
AL646047.9 77733 78040 15357670 N DUST
AL646047.9 79188 79292 15357671 N DUST
AL646047.9 79453 79528 15357672 N DUST
AL646047.9 79646 79660 15357673 N DUST
AL646047.9 79747 79772 15357674 N DUST
AL646047.9 79851 79896 15357675 N DUST
AL646047.9 80466 80491 15357676 N DUST
AL646047.9 80628 80673 15357677 N DUST
AL646047.9 80679 80691 15357678 N DUST
AL646047.9 81827 81833 15357679 N DUST
AL646047.9 82075 82097 15357680 N DUST
AL646047.9 82242 82275 15357681 N DUST
AL646047.9 82701 82730 15357682 N DUST
AL646047.9 83074 83174 15357683 N DUST
AL646047.9 83666 83677 15357684 N DUST
AL646047.9 83731 83737 15357685 N DUST
AL646047.9 84176 84223 15357686 N DUST
AL646047.9 84655 84676 15357687 N DUST
AL646047.9 84828 84858 15357688 N DUST
AL646047.9 85287 85304 15357689 N DUST
AL646047.9 85884 85901 15357690 N DUST
AL646047.9 86017 86023 15357691 N DUST
AL646047.9 87043 87115 15357692 N DUST
AL646047.9 87507 87530 15357693 N DUST
AL646047.9 87792 87872 15357694 N DUST
AL646047.9 88700 88721 15357695 N DUST
AL646047.9 88903 88925 15357696 N DUST
AL646047.9 89200 89221 15357697 N DUST
AL646047.9 89349 89377 15357698 N DUST
AL646047.9 89824 89830 15357699 N DUST
AL646047.9 90658 90698 15357700 N DUST
AL646047.9 91843 91849 15357701 N DUST
AL646047.9 91922 91929 15357702 N DUST
AL646047.9 92944 92955 15357703 N DUST
AL646047.9 92994 93038 15357704 N DUST
AL646047.9 93170 93198 15357705 N DUST