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Alignment last updated: 11/20/2008 16:56:51

Join Legend

  • Red circle Serious alignment problem, requires review. (details...)
    • Zero, or more than one, overlaps
    • Half dove-tail >50 bp
    • Alignment identity <98%
    • Alignment length <50 bp
    • >2 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Yellow circle Minor alignment problem. (details...)
    • Exactly one overlap
    • Half dove-tail >0 bp and <=50bp
    • Alignment identity <99.1%
    • Alignment length <2000 bp
    • >0 gaps, each gap >25 bp, not marked as an SSR
    • >0 gaps, each gap >50 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, not marked as an SSR
    • >0 gaps, each gap >500 bp, marked as an SSR
  • Green circle Excellent alignment, meets all defined criteria. (details...)
    • Exactly one RuleInfo
    • Half dove-tail <=0 bp
    • Alignment identity >=99.1%
    • Alignment length >=2000 bp
    • <=0 gaps, each gap >25 bp, not marked as an SSR
    • <=0 gaps, each gap >50 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, not marked as an SSR
    • <=0 gaps, each gap >500 bp, marked as an SSR
  • Black circle Certificate submitted, not yet approved.
  • Purple circle Certificate submitted and approved.
  • Gray circle Valid, contained clone
  • White circle Join not evaluated due to one accession not being finished.

Alignment for AL672209.7 and AL591174.13

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AL672209.7 Mouse DNA sequence from clone RP23-296N19 on chromosome 11, complete sequence [htgs_phase3]

Length: 17,284 bp

AL591174.13 Mouse DNA sequence from clone RP23-271B20 on chromosome 11, complete sequence [htgs_phase3]

Length: 205,379 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

  • Alignment 1
  • Align ID: 2124
  • Total Length: 2000
  • Aligned Length: 2000
  • Percent Identity: 100
  • Number of Gaps: 0
  • Number of Mismatches: 0
  • Source: CtgOverlap Seq-Align
  • Valid Switchpoint: true (A)
Overlap Image

Switch Points
TypePoint1Point2Orient1Orient2CuratorCommentTimeIdAlignmentReleases
A17284203379+-chenhcTaxid 10090 chrom 11 Primary assembly2008-11-20 16:56:51.333637602124GRCm39, GRCm38, MGSCv37


down arrow

Alignment 1 of 1

 AL672209.7 : + : 15285..17284
 AL591174.13 : - : 205379..203380
 Mismatches = 0, Gaps = 0, Length = 2000
 Percent identity = 100%
 Score = 3965 bits (2000), Expect = 0
  0 BAC and 2 Fosmid bridging clones.
  0 BAC and 2 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL672209.7  >15285   gaattcaactcaggttgttggcaagagcaacaagtgctcttaaccactgatccatctctc 15344  
AL591174.13 <205379  ............................................................ 205320 

AL672209.7  >15345   caagacatgtcttccaatttccccagcactgtaccattgaatctttcctcatcttttgat 15404  
AL591174.13 <205319  ............................................................ 205260 

AL672209.7  >15405   ctttgcttctttttttctcccaaagttaacaatgtttaagaaatggtatgtgctaggcac 15464  
AL591174.13 <205259  ............................................................ 205200 

AL672209.7  >15465   tattttaaatgctgtgtcatcttattttcttcctgtagctcttctactttgaggcataga 15524  
AL591174.13 <205199  ............................................................ 205140 

AL672209.7  >15525   gctaattttttaatattataaaaccaataaaagcttttgttggttgggcatgaaaatata 15584  
AL591174.13 <205139  ............................................................ 205080 

AL672209.7  >15585   tgcttgaaaccccaaagctgagagaggaagattgggaatttgagaccagcctgggcaaca 15644  
AL591174.13 <205079  ............................................................ 205020 

AL672209.7  >15645   gagtgagacccatctttaaaacgtggttaaaaaatattttaggcacatgtgccaaaacac 15704  
AL591174.13 <205019  ............................................................ 204960 

AL672209.7  >15705   ccatacagaaaaaggtgaggaattctttcttacatacgctctactaattttactttacca 15764  
AL591174.13 <204959  ............................................................ 204900 

AL672209.7  >15765   tttctatattaatgactgtcttaatgtgtgtgttgttatatatgtgtgtgcctcttggca 15824  
AL591174.13 <204899  ............................................................ 204840 

AL672209.7  >15825   catgctctgctactaagacagactatagcccctcttctgtcttactatgattgataccaa 15884  
AL591174.13 <204839  ............................................................ 204780 

AL672209.7  >15885   ggtatatctagcatttcttctgggtttaggggtggattttttgcctgtttatttttccaa 15944  
AL591174.13 <204779  ............................................................ 204720 

AL672209.7  >15945   atgacgtaagtattttatgtcctattttaaattctcattgaagtgcttgtcaaaaaaatg 16004  
AL591174.13 <204719  ............................................................ 204660 

AL672209.7  >16005   cttaatcattggctggagagttggctcagtggttaagagcaccgactgctgttccagagg 16064  
AL591174.13 <204659  ............................................................ 204600 

AL672209.7  >16065   tcctgagttcaattcccagcaaaaatgtgatagctcacagccatctgtaatgggatccga 16124  
AL591174.13 <204599  ............................................................ 204540 

AL672209.7  >16125   tgccctcttctggtgtgtctgaagagtgacagtgtactcacatacatttaaaaatgctta 16184  
AL591174.13 <204539  ............................................................ 204480 

AL672209.7  >16185   attatcatatactgtcaacaactgcagttttatggcaactagtcaagatatgtatcctat 16244  
AL591174.13 <204479  ............................................................ 204420 

AL672209.7  >16245   tcatagcctttggtatgttccagatactagctaaatttggttgagggaatgaataaattg 16304  
AL591174.13 <204419  ............................................................ 204360 

AL672209.7  >16305   ggacatctgaacttgttacctcgcattaatgttttctacattcacccatttctgtgtgga 16364  
AL591174.13 <204359  ............................................................ 204300 

AL672209.7  >16365   tattatttatttggcattatagttttttcttatagttttctaattattttcaccaacata 16424  
AL591174.13 <204299  ............................................................ 204240 

AL672209.7  >16425   tggagaagtcatgtacatctccacatttatttcgttagttttttttttttttaatttaag 16484  
AL591174.13 <204239  ............................................................ 204180 

AL672209.7  >16485   gttatgtttctgaaagtgttccccaggtatcttttcaataagcaattactttatccgtta 16544  
AL591174.13 <204179  ............................................................ 204120 

AL672209.7  >16545   agaataaatttagtagtcaggcagtggtggcgcacgcctttaatccaagcactcaggagg 16604  
AL591174.13 <204119  ............................................................ 204060 

AL672209.7  >16605   cagaggcaggcgggtctctgtgaggccagcctgggctacagagtgagttccaaaacagcc 16664  
AL591174.13 <204059  ............................................................ 204000 

AL672209.7  >16665   agagctaatcagagtaaccctgtctggaaaaacaaaacaaaaagaatatgtatttagttt 16724  
AL591174.13 <203999  ............................................................ 203940 

AL672209.7  >16725   cttatttaactaaattgttatctgtttgtgtattgttctagaatactcaaattatgggat 16784  
AL591174.13 <203939  ............................................................ 203880 

AL672209.7  >16785   ttttaaaaatttaaatgtactatttttcttttatttatccttctttattatttgtttgtt 16844  
AL591174.13 <203879  ............................................................ 203820 

AL672209.7  >16845   tgtttattagattttgtgtatgactactttgcctgtagggtatatatgcttaccatacat 16904  
AL591174.13 <203819  ............................................................ 203760 

AL672209.7  >16905   gtgtctgttacccacaagttcagaagaaggtttcaggtctcctggaactatagttatgaa 16964  
AL591174.13 <203759  ............................................................ 203700 

AL672209.7  >16965   tggctgttgtgagctactttattgatgctacgatccaaacctaggctctatgcaagagaa 17024  
AL591174.13 <203699  ............................................................ 203640 

AL672209.7  >17025   acaagttctcttaaccactggggcatctctccagcccgtgtgtgtgtgtgtgtgtgtgtg 17084  
AL591174.13 <203639  ............................................................ 203580 

AL672209.7  >17085   tgtgtgtgtgtgtgtgtgtgtgtgtcagcacatatgtggaggtcagaagacaactacatg 17144  
AL591174.13 <203579  ............................................................ 203520 

AL672209.7  >17145   aaatttcttctacccttgcataggtttcaaggatcaaacctaggtctttaggattgcata 17204  
AL591174.13 <203519  ............................................................ 203460 

AL672209.7  >17205   ctaagccttgttacccattgaatcttcctagcggccaagtactgttttacagggtggcta 17264  
AL591174.13 <203459  ............................................................ 203400 

AL672209.7  >17265   aaggtgcaagctctctgttg 17284  
AL591174.13 <203399  .................... 203380 



Events
IdTypeDateWhodidComment
4081ImportOldDb09/02/2005 13:38:00f_old_db
4082ReSetShortOvlp09/04/2008 10:31:48dbo
174517CreateSwitchPt11/20/2008 16:56:51chenhc
tpf_builder 1.6  Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib



down arrow BAC Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
C3H-173E16 AL591174.1399.84%pos 102139 (F+)
C3H-188O2AL591174.1399.6%pos 121114 (R-)  
C3H-213F4 AL591174.13100%pos 165881 (F-)
C3H-72F19 AL591174.1399.12%pos 125974 (F+)
CH29-145N18 AL591174.1399.67%pos 138264 (F+)
CH29-162D14AL591174.1399.87%pos 66392 (R+)  
CH29-40G19AL591174.1399.35%pos 78482 (R-)  
CH29-552E14 AL672209.7100%pos 1708 (F-)
CH29-591E14AL672209.799.5%pos 12223 (R+)  
CH29-594D22AL591174.1399.84%pos 175007 (R+)  
CH29-5K13 AL672209.7100%pos 12314 (F+)
CH29-606P16 AL591174.1399.49%pos 145639 (F-)
CH29-92B5 AL591174.13100%pos 66775 (F+)
RP24-182M23AL591174.1399.34%pos 138275 (R+)  
RP24-282J13 AL591174.1399.08%pos 118483 (F-)
RP24-359D4 AL591174.1399.42%pos 202995 (F-)
RP24-387E9 AL591174.1399.42%pos 200731 (F+)
RP24-73J14 AL591174.1399.26%pos 181034 (F+)
RP24-74P23 AL591174.1399.76%pos 158955 (F+)

down arrow Fosmid Ends
CloneRF
Accession%idPosition (strand) Accession%idPosition (strand)
WI1-1010P22AL591174.13100%pos 150694 (R+) AL591174.13100%pos 191298 (F-)
WI1-1071L9AL591174.13100%pos 40969 (R+)  
WI1-1089C17AL591174.13100%pos 87940 (R+)  
WI1-1138K16AL672209.799.84%pos 14960 (R-)  
WI1-1147K4AL591174.13100%pos 60342 (R-) AL591174.13100%pos 18618 (F+)
WI1-1160B18 AL591174.1399.83%pos 18614 (F+)
WI1-1244P24AL672209.799.7%pos 14252 (R+) AL591174.13100%pos 164997 (F+)
WI1-1515L10 AL591174.1399.29%pos 203367 (F+)
WI1-1541C7 AL591174.1399.68%pos 175293 (F+)
WI1-1577K16AL591174.13100%pos 175400 (R-) AL591174.1399.64%pos 140048 (F+)
WI1-1612D9AL591174.13100%pos 145066 (R+) AL591174.13100%pos 181640 (F-)
WI1-1666C10AL591174.13100%pos 192416 (R-) AL591174.1399.59%pos 150775 (F+)
WI1-1670A2AL591174.13100%pos 11919 (R+)  
WI1-168K15AL591174.13100%pos 82635 (R-) AL591174.1399.43%pos 41675 (F+)
WI1-1701F21AL591174.13100%pos 40057 (R+) AL591174.13100%pos 81846 (F-)
WI1-1701G5AL591174.13100%pos 40073 (R+) AL591174.13100%pos 81847 (F-)
WI1-1767G10AL591174.1399.17%pos 75038 (R-) AL591174.13100%pos 39131 (F+)
WI1-1767P21AL591174.1399.8%pos 75043 (R-) AL591174.1399.66%pos 39137 (F+)
WI1-1779N8AL591174.13100%pos 135549 (R-)  
WI1-1780K12AL672209.7100%pos 531 (R-)  
WI1-178J6AL591174.1399.75%pos 167559 (R-)  
WI1-1852B10AL591174.13100%pos 131511 (R+) AL591174.1399.67%pos 170365 (F-)
WI1-1965M20AL591174.13100%pos 55955 (R-) AL591174.1399.71%pos 14746 (F+)
WI1-1978D9AL591174.1399.45%pos 181606 (R-) AL591174.1399.47%pos 143498 (F+)
WI1-2066F17AL591174.1399.83%pos 112507 (R-) AL591174.13100%pos 72663 (F+)
WI1-2066I3 AL591174.13100%pos 72664 (F+)
WI1-2139C17AL591174.1399.76%pos 12438 (R-)  
WI1-2188L5 AL591174.13100%pos 142621 (F+)
WI1-2233H22AL591174.13100%pos 55955 (R-) AL591174.13100%pos 14739 (F+)
WI1-2236O7AL672209.7100%pos 9533 (R+) AL591174.1399.61%pos 173325 (F+)
WI1-2246K23AL591174.13100%pos 187914 (R-) AL591174.1399.61%pos 149323 (F+)
WI1-2277O11AL591174.13100%pos 10563 (R+) AL591174.13100%pos 53667 (F-)
WI1-2444D6AL591174.13100%pos 118443 (R-) AL591174.1399.56%pos 78460 (F+)
WI1-2489J12 AL672209.7100%pos 2539 (F-)
WI1-2533M24AL591174.13100%pos 167986 (R+)  
WI1-2561D24AL591174.1399.75%pos 90305 (R+) AL591174.13100%pos 129068 (F-)
WI1-2595A21AL591174.1399.85%pos 175428 (R-) AL591174.1399.66%pos 140048 (F+)
WI1-2625J10 AL672209.7100%pos 14431 (F-)
WI1-2800C8AL591174.13100%pos 35407 (R-)  
WI1-2809A2AL591174.13100%pos 86473 (R+) AL591174.13100%pos 125881 (F-)
WI1-2815J24AL591174.1399.77%pos 123921 (R-) AL591174.13100%pos 83984 (F+)
WI1-2844P1 AL591174.1399.78%pos 42914 (F-)
WI1-2909O14 AL672209.7100%pos 4424 (F+)
WI1-301G19 AL672209.7100%pos 14034 (F-)
WI1-348C18AL591174.1399.71%pos 181609 (R+)  
WI1-361I12AL591174.1399.76%pos 163237 (R-)  
WI1-428H11 AL591174.13100%pos 12775 (F+)
WI1-461P20AL591174.1399.65%pos 135004 (R-) AL591174.13100%pos 96528 (F+)
WI1-508J4 AL591174.1399.85%pos 20874 (F-)
WI1-523K7AL591174.13100%pos 65127 (R+)  
WI1-535O2 AL591174.13100%pos 43188 (F+)
WI1-711D1AL591174.13100%pos 59744 (R-) AL591174.13100%pos 21072 (F+)
WI1-7B21AL591174.1399.85%pos 927 (R+)  
WI1-817A20 AL591174.13100%pos 60382 (F+)
WI1-834I14AL591174.13100%pos 156702 (R-) AL591174.1399.68%pos 117163 (F+)
WI1-897O4AL591174.1399.62%pos 74069 (R-) AL591174.1399.67%pos 33051 (F+)
AL591174.1399.36%pos 74106 (R-)  

down arrow Repeats
acc start stop repeat id strand name family class
AL672209.7 10078 10183 14472919 - PB1D10 Alu SINE
AL672209.7 10097 10201 14472920 - ID_B1 B4 SINE
AL672209.7 10235 10383 14472921 - B1_Mus1 Alu SINE
AL672209.7 10393 10576 14472922 - B2_Mm2 B2 SINE
AL672209.7 10596 10658 14472923 + (CA)n Simple_repeat
AL672209.7 11033 11178 14472924 + B1_Mus1 Alu SINE
AL672209.7 11465 11608 14472925 + B1_Mur3 Alu SINE
AL672209.7 11799 11863 14472926 + (TTTTG)n
AL672209.7 11864 12003 14472927 - B1_Mm Alu SINE
AL672209.7 12131 12246 14472928 + PB1D10 Alu SINE
AL672209.7 12728 12981 14472929 + B4 B4 SINE
AL672209.7 13142 13358 14472930 + B3 B2 SINE
AL672209.7 13417 13717 14472931 - B4A B4 SINE
AL672209.7 13774 13798 14472932 + AT_rich Low_complexity
AL672209.7 14237 14292 14472933 - PB1 Alu SINE
AL672209.7 14506 14585 14472934 - L2c L2
AL672209.7 14716 14983 14472935 - L1M5 L1
AL672209.7 15140 15346 14472936 - B3 B2 SINE
AL672209.7 15451 15477 14472937 - MIR MIR SINE
AL672209.7 15517 15566 14472938 + MT2B2 ERVL LTR
AL672209.7 15567 15665 14472939 + PB1D11 Alu SINE
AL672209.7 16015 16171 14472940 + B2_Mm2 B2 SINE
AL672209.7 16463 16483 14472941 + AT_rich Low_complexity
AL672209.7 16559 16701 14472942 + B1_Mur4 Alu SINE
AL672209.7 16780 16800 14472943 + AT_rich Low_complexity
AL672209.7 16847 17061 14472944 - B3 B2 SINE
AL672209.7 17062 17109 14472945 + (TG)n
AL672209.7 17110 17240 14472946 - RSINE1 B4 SINE
AL672209.7 9576 9872 14472916 - L1MB8 L1
AL672209.7 9500 9575 14472918 - RLTR20A4 ERVK LTR
AL672209.7 9449 9498 14472917 + (TA)n Simple_repeat
AL672209.7 9242 9441 14472916 - L1MB8 L1
AL672209.7 9067 9232 14472915 - RMER17C ERVK LTR
AL672209.7 9019 9055 14472914 + (TTTTTA)n
AL672209.7 8377 8575 14472913 + URR1A hAT-Charlie DNA
AL672209.7 7933 8086 14472912 + B1_Mur1 Alu SINE
AL672209.7 6891 6957 14472911 + ID_B1 B4 SINE
AL672209.7 6858 6890 14472910 + B1F2 Alu SINE
AL672209.7 6484 6663 14472909 - B3A B2 SINE
AL672209.7 8437 8481 15216458 N DUST
AL672209.7 9019 9063 15216459 N DUST
AL672209.7 9117 9234 15216460 N DUST
AL672209.7 9449 9543 15216461 N DUST
AL672209.7 10064 10088 15216462 N DUST
AL672209.7 10193 10228 15216463 N DUST
AL672209.7 10390 10406 15216464 N DUST
AL672209.7 10596 10658 15216465 N DUST
AL672209.7 11167 11185 15216466 N DUST
AL672209.7 11592 11617 15216467 N DUST
AL672209.7 11786 11873 15216468 N DUST
AL672209.7 12006 12018 15216469 N DUST
AL672209.7 13747 13803 15216470 N DUST
AL672209.7 14175 14184 15216471 N DUST
AL672209.7 14758 14829 15216472 N DUST
AL672209.7 14933 14992 15216473 N DUST
AL672209.7 15113 15184 15216474 N DUST
AL672209.7 15414 15420 15216475 N DUST
AL672209.7 15789 15814 15216476 N DUST
AL672209.7 15996 16002 15216477 N DUST
AL672209.7 16463 16476 15216478 N DUST
AL672209.7 16692 16707 15216479 N DUST
AL672209.7 16773 16865 15216480 N DUST
AL672209.7 17062 17109 15216481 N DUST
AL672209.7 6227 6365 14472908 - B1F2 Alu SINE
AL672209.7 5994 6152 14472907 - B3A B2 SINE
AL672209.7 5728 5922 14472906 + B3 B2 SINE
AL672209.7 5564 5710 14472905 + B1_Mur1 Alu SINE
AL672209.7 3478 3576 14472904 - PB1D10 Alu SINE
AL672209.7 1322 1360 14472903 + (TTG)n
AL672209.7 1239 1280 14472902 + (TGG)n Simple_repeat
AL672209.7 883 905 14472901 + AT_rich Low_complexity
AL672209.7 744 818 14472900 + BC1_Mm ID SINE
AL672209.7 468 496 14472899 + AT_rich Low_complexity
AL672209.7 235 299 14472898 + Tigger16b TcMar-Tigger DNA
AL672209.7 123 214 14472897 + A-rich
AL672209.7 9 122 14472896 + B1_Mur2 Alu SINE
AL672209.7 123 215 15216447 N DUST
AL672209.7 1239 1280 15216448 N DUST
AL672209.7 1322 1368 15216449 N DUST
AL672209.7 1894 1900 15216450 N DUST
AL672209.7 3784 3791 15216451 N DUST
AL672209.7 5865 5902 15216452 N DUST
AL672209.7 5939 5945 15216453 N DUST
AL672209.7 5982 5993 15216454 N DUST
AL672209.7 6948 6997 15216455 N DUST
AL672209.7 7880 7889 15216456 N DUST
AL672209.7 8075 8082 15216457 N DUST
AL591174.13 17616 17728 8402025 + (TG)n
AL591174.13 18746 18872 8402026 + B1_Mur1 Alu SINE
AL591174.13 18999 19028 8402027 + AT_rich Low_complexity
AL591174.13 19208 19258 8402028 - RSINE1 B4 SINE
AL591174.13 19851 19963 8402029 + L1_Mur2 L1
AL591174.13 20097 20113 8402030 + B4A B4 SINE
AL591174.13 20114 20314 8402031 + B3 B2 SINE
AL591174.13 20315 20453 8402030 + B4A B4 SINE
AL591174.13 20354 20471 8402033 + B1_Mur1 Alu SINE
AL591174.13 21309 21347 8402034 + (TCTG)n
AL591174.13 21370 21758 8402035 + RMER15 ERVL LTR
AL591174.13 22424 22496 8402036 - MIRc MIR SINE
AL591174.13 23524 23546 8402037 + AT_rich Low_complexity
AL591174.13 24378 24443 8402038 + (TG)n
AL591174.13 25856 26081 8402039 - URR1B hAT-Charlie DNA
AL591174.13 26249 26392 8402040 + MIR MIR SINE
AL591174.13 28719 28747 8402041 - RLTR20C1_MM ERVK LTR
AL591174.13 28748 28927 8402042 + (CA)n Simple_repeat
AL591174.13 28928 28976 8402041 - RLTR20C1_MM ERVK LTR
AL591174.13 28977 29006 8402044 + (CA)n Simple_repeat
AL591174.13 29256 29361 8402045 + PB1D7 Alu SINE
AL591174.13 29511 29613 8402046 + B1_Mus1 Alu SINE
AL591174.13 29936 30074 8402047 + MLT1B ERVL-MaLR LTR
AL591174.13 30072 30218 8402048 + ID_B1 B4 SINE
AL591174.13 30265 30398 8402047 + MLT1B ERVL-MaLR LTR
AL591174.13 30552 30698 8402050 + B1_Mus2 Alu SINE
AL591174.13 31703 31792 8402051 - PB1D9 Alu SINE
AL591174.13 31735 31860 8402052 - MT2B ERVL LTR
AL591174.13 33627 33828 8402053 + B3 B2 SINE
AL591174.13 33830 33929 8402054 - RLTR20C1_MM ERVK LTR
AL591174.13 33963 34007 8402055 + (TG)n
AL591174.13 34089 34128 8402056 + (CA)n Simple_repeat
AL591174.13 34149 34280 8402057 - MIRb MIR SINE
AL591174.13 17425 17451 8402024 + (G)n Simple_repeat
AL591174.13 15832 16008 8402023 - URR1A hAT-Charlie DNA
AL591174.13 14170 14333 8402022 + URR1A hAT-Charlie DNA
AL591174.13 13212 13277 8402021 + (GGGA)n Simple_repeat
AL591174.13 13068 13210 8402020 + B1_Mus2 Alu SINE
AL591174.13 13014 13065 8402019 + A-rich
AL591174.13 12867 13013 8402018 + B1_Mus2 Alu SINE
AL591174.13 12659 12843 8402017 - B4A B4 SINE
AL591174.13 12424 12536 8402016 + (TATG)n
AL591174.13 12306 12423 8402015 + B1_Mur2 Alu SINE
AL591174.13 11710 11836 8402014 - ID_B1 B4 SINE
AL591174.13 11428 11604 8402013 + B2_Mm2 B2 SINE
AL591174.13 6500 6570 8402012 + MER53 hAT DNA
AL591174.13 6397 6479 8402011 + MER5B hAT-Charlie DNA
AL591174.13 3072 3187 8402010 - PB1D9 Alu SINE
AL591174.13 2940 3063 8402009 + B1_Mur1 Alu SINE
AL591174.13 2675 2867 8402008 - B2_Mm1a B2 SINE
AL591174.13 2213 2267 8402007 + B3 B2 SINE
AL591174.13 1394 1549 8402006 - B1_Mur1 Alu SINE
AL591174.13 1135 1255 8402005 + B4A B4 SINE
AL591174.13 581 663 8402002 - PB1D7 Alu SINE
AL591174.13 542 580 8402003 + (CAGA)n Simple_repeat
AL591174.13 512 541 8402002 - PB1D7 Alu SINE
AL591174.13 55 184 8402001 + RSINE1 B4 SINE
AL591174.13 34373 34541 8402058 - MER104 TcMar-Tc2 DNA
AL591174.13 35656 35795 8402059 - MIRb MIR SINE
AL591174.13 36069 36214 8402060 + B1F2 Alu SINE
AL591174.13 36262 36462 8402061 + B3 B2 SINE
AL591174.13 36463 36632 8402062 + B3A B2 SINE
AL591174.13 38013 38130 8402063 + L2a L2
AL591174.13 41824 41926 8402064 + (CA)n Simple_repeat
AL591174.13 41949 42158 8402065 + URR1A hAT-Charlie DNA
AL591174.13 42467 42587 8402066 + MIRb MIR SINE
AL591174.13 43054 43168 8402067 + PB1D7 Alu SINE
AL591174.13 43222 43365 8402068 + MIRb MIR SINE
AL591174.13 43556 43702 8402069 - B1_Mus1 Alu SINE
AL591174.13 43762 43879 8402070 + B1_Mus1 Alu SINE
AL591174.13 43913 43951 8402071 + (CATA)n Simple_repeat
AL591174.13 44606 44723 8402072 + ID_B1 B4 SINE
AL591174.13 44880 45004 8402073 + B1_Mur1 Alu SINE
AL591174.13 45031 45111 8402074 + ID ID
AL591174.13 46046 46255 8402075 + B3A B2 SINE
AL591174.13 46256 46402 8402076 + B1_Mur4 Alu SINE
AL591174.13 46477 46557 8402077 + RSINE1 B4 SINE
AL591174.13 46596 46746 8402078 - B1_Mur3 Alu SINE
AL591174.13 47753 47832 8402079 - B1_Mur1 Alu SINE
AL591174.13 47774 47882 8402080 - RLTR20C1_MM ERVK LTR
AL591174.13 47878 47945 8402081 - MT2B ERVL LTR
AL591174.13 48564 48627 8402082 - L2a L2
AL591174.13 49223 49288 8402083 + ID4_ ID SINE
AL591174.13 49792 49896 8402084 - PB1D10 Alu SINE
AL591174.13 50035 50055 8402085 + (TG)n
AL591174.13 50058 50196 8402086 - B1_Mur3 Alu SINE
AL591174.13 51454 51674 8402087 - ID_B1 B4 SINE
AL591174.13 51711 51785 8402088 - PB1D10 Alu SINE
AL591174.13 51782 51867 8402089 - Tigger17a TcMar-Tigger DNA
AL591174.13 51916 51998 8402090 + L2 L2 LINE
AL591174.13 52033 52160 8402091 - LTR16 ERVL LTR
AL591174.13 52826 52877 8402092 - B3A B2 SINE
AL591174.13 53261 53313 8402093 + MIR MIR SINE
AL591174.13 53975 54034 8402094 - MIRc MIR SINE
AL591174.13 54924 55175 8402095 + LTR86A1 ERVL LTR
AL591174.13 55277 55360 8402096 + (CA)n Simple_repeat
AL591174.13 55367 55446 8402097 + MIR3 MIR SINE
AL591174.13 55463 55548 8402098 + PB1D7 Alu SINE
AL591174.13 55587 55790 8402099 + B3 B2 SINE
AL591174.13 55793 55984 8402100 - ID_B1 B4 SINE
AL591174.13 57349 57521 8402101 + RSINE1 B4 SINE
AL591174.13 57728 57836 8402102 + MER5B hAT-Charlie DNA
AL591174.13 58483 58629 8402103 + (CA)n Simple_repeat
AL591174.13 58664 58812 8402103 + (CA)n Simple_repeat
AL591174.13 58814 58868 8402105 - RLTR20A4 ERVK LTR
AL591174.13 58869 58902 8402106 + (CTCA)n
AL591174.13 58903 58915 8402105 - RLTR20A4 ERVK LTR
AL591174.13 59150 59198 8402108 - MIRc MIR SINE
AL591174.13 59389 59486 8402109 - PB1D10 Alu SINE
AL591174.13 60055 60161 8402110 - L2c L2
AL591174.13 60195 60312 8402111 - MIRc MIR SINE
AL591174.13 60803 60948 8402112 + RSINE1 B4 SINE
AL591174.13 62088 62275 8402113 - B2_Mm2 B2 SINE
AL591174.13 62397 62511 8402114 + ID_B1 B4 SINE
AL591174.13 62512 62618 8402115 + U6 snRNA
AL591174.13 62619 62725 8402114 + ID_B1 B4 SINE
AL591174.13 63521 63725 8402117 + B3 B2 SINE
AL591174.13 63852 63997 8402118 + B1_Mus2 Alu SINE
AL591174.13 64176 64228 8402119 + MER34A ERV1 LTR
AL591174.13 64229 64283 8402120 - B1_Mus2 Alu SINE
AL591174.13 64284 64392 8402121 + (TC)n
AL591174.13 64393 64479 8402120 - B1_Mus2 Alu SINE
AL591174.13 64480 64589 8402119 + MER34A ERV1 LTR
AL591174.13 64728 64753 8402124 + (GGA)n Simple_repeat
AL591174.13 64895 64929 8402125 + (GGGGA)n Simple_repeat
AL591174.13 65675 65883 8402126 + B3 B2 SINE
AL591174.13 65891 66026 8402127 + B1_Mur2 Alu SINE
AL591174.13 66040 66097 8402128 + AT_rich Low_complexity
AL591174.13 66108 66217 8402129 + PB1D10 Alu SINE
AL591174.13 66226 66325 8402130 + U6 snRNA
AL591174.13 66329 66350 8402131 + (CAAA)n Simple_repeat
AL591174.13 67132 67262 8402132 - L2c L2
AL591174.13 67285 67671 8402133 + MTD ERVL-MaLR LTR
AL591174.13 67823 68083 8402134 + MLTR73 ERV1 LTR
AL591174.13 69521 69564 8402135 + GA-rich
AL591174.13 70030 70108 8402136 + L1MC4 L1
AL591174.13 70147 70284 8402137 + B1_Mus1 Alu SINE
AL591174.13 70318 70416 8402138 + ID_B1 B4 SINE
AL591174.13 70515 70693 8402139 + B3 B2 SINE
AL591174.13 70719 70742 8402140 + (CA)n Simple_repeat
AL591174.13 71173 71260 8402141 - MER5B hAT-Charlie DNA
AL591174.13 71298 71398 8402142 + (GA)n Simple_repeat
AL591174.13 72420 72530 8402143 - RSINE1 B4 SINE
AL591174.13 72543 72657 8402144 - B3 B2 SINE
AL591174.13 72661 72799 8402145 + B3A B2 SINE
AL591174.13 72911 73055 8402146 + B1_Mus2 Alu SINE
AL591174.13 73126 73209 8402147 + IMPB_01 Satellite
AL591174.13 73210 73265 8402148 + MER2 TcMar-Tigger DNA
AL591174.13 73266 73341 8402149 + ID4_ ID SINE
AL591174.13 73342 73627 8402148 + MER2 TcMar-Tigger DNA
AL591174.13 73691 73777 8402151 + PB1D9 Alu SINE
AL591174.13 73899 74148 8402152 - L1M2 L1
AL591174.13 74464 74662 8402153 - B3 B2 SINE
AL591174.13 74678 74810 8402154 + B1F Alu SINE
AL591174.13 75201 75419 8402155 + B4A B4 SINE
AL591174.13 77353 77429 8402156 - MIRc MIR SINE
AL591174.13 78069 78171 8402157 + MT2B ERVL LTR
AL591174.13 78083 78206 8402158 + B1_Mur4 Alu SINE
AL591174.13 78207 78245 8402159 + (CAAAA)n Simple_repeat
AL591174.13 78563 78737 8402160 - B2_Mm2 B2 SINE
AL591174.13 78896 78939 8402161 + (GGGA)n Simple_repeat
AL591174.13 78946 79069 8402162 - MTEa ERVL-MaLR LTR
AL591174.13 79070 79091 8402163 + (TGG)n Simple_repeat
AL591174.13 79092 79245 8402162 - MTEa ERVL-MaLR LTR
AL591174.13 79246 79437 8402165 + URR1A hAT-Charlie DNA
AL591174.13 79917 79966 8402166 + (CA)n Simple_repeat
AL591174.13 80177 80488 8402167 + MTD ERVL-MaLR LTR
AL591174.13 80580 80711 8402168 + MER21B ERVL LTR
AL591174.13 80829 80944 8402169 - PB1D10 Alu SINE
AL591174.13 82192 82337 8402170 + B1_Mus1 Alu SINE
AL591174.13 82457 82572 8402171 - PB1D10 Alu SINE
AL591174.13 82613 82822 8402172 - ID_B1 B4 SINE
AL591174.13 82888 82933 8402173 + (CTCA)n
AL591174.13 83009 83095 8402174 + IMPB_01 Satellite
AL591174.13 83188 83320 8402175 + RMER15 ERVL LTR
AL591174.13 84790 84823 8402176 + (TTTTG)n
AL591174.13 84824 84961 8402177 - B1_Mus1 Alu SINE
AL591174.13 85064 85217 8402178 - MIRc MIR SINE
AL591174.13 85978 86113 8402179 - MIR MIR SINE
AL591174.13 86827 86887 8402180 + (TG)n
AL591174.13 87177 87493 8402181 + L1MEf L1
AL591174.13 87727 87830 8402182 + ID_B1 B4 SINE
AL591174.13 87917 88109 8402183 + URR1B hAT-Charlie DNA
AL591174.13 89353 89485 8402184 - RLTR20C1_MM ERVK LTR
AL591174.13 89575 89789 8402185 + B4A B4 SINE
AL591174.13 90360 90464 8402186 + MIRb MIR SINE
AL591174.13 91846 91886 8402187 + T-rich
AL591174.13 91888 92085 8402188 - ID_B1 B4 SINE
AL591174.13 92475 92607 8402189 - B1_Mus2 Alu SINE
AL591174.13 93183 93511 8402190 - ORR1D1 ERVL-MaLR LTR
AL591174.13 93821 93952 8402191 + B4A B4 SINE
AL591174.13 93953 94544 8402192 + Lx8b L1
AL591174.13 94556 94700 8402193 + B1_Mur4 Alu SINE
AL591174.13 94802 94993 8402194 - B2_Mm2 B2 SINE
AL591174.13 95236 95284 8402195 + (TG)n
AL591174.13 95286 95377 8402196 + IMPB_01 Satellite
AL591174.13 96627 96758 8402197 - MIR MIR SINE
AL591174.13 97253 97400 8402198 - B2_Mm2 B2 SINE
AL591174.13 97456 97480 8402199 + (TAATG)n
AL591174.13 97515 97668 8402200 - RSINE1 B4 SINE
AL591174.13 98214 98340 8402201 + L1MD L1
AL591174.13 98368 98550 8402202 + B2_Mm2 B2 SINE
AL591174.13 98551 98565 8402203 + AT_rich Low_complexity
AL591174.13 98566 98712 8402204 - B1_Mus1 Alu SINE
AL591174.13 98713 98754 8402205 + AT_rich Low_complexity
AL591174.13 98758 98856 8402206 + PB1D9 Alu SINE
AL591174.13 98853 99005 8402207 + B3 B2 SINE
AL591174.13 99125 99296 8402208 - B3 B2 SINE
AL591174.13 99435 99551 8402209 + PB1D10 Alu SINE
AL591174.13 99590 100123 8402210 + (TCCA)n
AL591174.13 100124 100201 8402211 - ID4 ID SINE
AL591174.13 100229 100436 8402212 + ID_B1 B4 SINE
AL591174.13 100512 100535 8402213 + AT_rich Low_complexity
AL591174.13 100797 100856 8402214 + ID ID
AL591174.13 101165 101363 8402215 + L1MA7 L1
AL591174.13 101698 101719 8402216 + GC_rich Low_complexity
AL591174.13 102528 102671 8402217 + B2_Mm2 B2 SINE
AL591174.13 102672 102702 8402218 + (TG)n
AL591174.13 102703 102730 8402217 + B2_Mm2 B2 SINE
AL591174.13 102734 102871 8402220 + B1_Mur4 Alu SINE
AL591174.13 102903 102969 8402221 + B3 B2 SINE
AL591174.13 102971 103098 8402222 - B3 B2 SINE
AL591174.13 103526 103603 8402223 + MTC ERVL-MaLR LTR
AL591174.13 103611 103771 8402224 + B3 B2 SINE
AL591174.13 103772 103794 8402225 + (TAAA)n Simple_repeat
AL591174.13 103795 103828 8402226 + B2_Mm2 B2 SINE
AL591174.13 103823 104165 8402223 + MTC ERVL-MaLR LTR
AL591174.13 104920 105060 8402228 + CT-rich
AL591174.13 105099 105191 8402229 + (TCCC)n
AL591174.13 105237 105360 8402230 - B1_Mur2 Alu SINE
AL591174.13 105531 105667 8402231 + ID_B1 B4 SINE
AL591174.13 106213 106357 8402232 - L1MC3 L1
AL591174.13 106374 106476 8402233 - U6 snRNA
AL591174.13 106481 106504 8402234 + (TTTA)n
AL591174.13 106505 106574 8402235 - ID_B1 B4 SINE
AL591174.13 106581 106788 8402236 - RSINE1 B4 SINE
AL591174.13 106897 106993 8402237 + C-rich
AL591174.13 106999 107089 8402238 - RMER15 ERVL LTR
AL591174.13 107105 107179 8402239 - Lx8 L1
AL591174.13 107168 107280 8402240 - Lx8 L1
AL591174.13 107303 107322 8402241 + (TTG)n
AL591174.13 107352 107371 8402242 + (TTTTG)n
AL591174.13 107374 107506 8402243 - B1_Mus1 Alu SINE
AL591174.13 107532 107606 8402244 - ID2 ID SINE
AL591174.13 108301 108331 8402245 + (TC)n
AL591174.13 108333 108357 8402246 + (TG)n
AL591174.13 110327 110377 8402247 + GC_rich Low_complexity
AL591174.13 110487 110508 8402248 + GC_rich Low_complexity
AL591174.13 110510 110529 8402249 + (CGGGG)n
AL591174.13 111622 111649 8402250 + (TTTTTG)n
AL591174.13 111687 111718 8402251 + (TGAA)n Simple_repeat
AL591174.13 112332 112463 8402252 + MLT1B ERVL-MaLR LTR
AL591174.13 112545 112664 8402253 + MIRb MIR SINE
AL591174.13 112719 112929 8402254 - ID_B1 B4 SINE
AL591174.13 113363 113553 8402255 - B2_Mm2 B2 SINE
AL591174.13 113561 113765 8402256 - B3 B2 SINE
AL591174.13 113780 113864 8402257 + (CAT)n Simple_repeat
AL591174.13 114515 114551 8402258 + (TG)n
AL591174.13 114641 114769 8402259 - B3A B2 SINE
AL591174.13 114766 114879 8402260 + URR1B hAT-Charlie DNA
AL591174.13 115134 115210 8402261 + PB1 Alu SINE
AL591174.13 115240 115609 8402262 - MTC ERVL-MaLR LTR
AL591174.13 116585 116877 8402263 - B4A B4 SINE
AL591174.13 116870 116896 8402264 + B4 B4 SINE
AL591174.13 116897 117028 8402265 + B1_Mur3 Alu SINE
AL591174.13 117060 117134 8402266 - MER33 hAT-Charlie DNA
AL591174.13 117326 117402 8402267 - ID4 ID SINE
AL591174.13 117548 117563 8402268 + ORR1B1-int ERVL-MaLR LTR
AL591174.13 117564 117692 8402269 + B1_Mus1 Alu SINE
AL591174.13 117610 117704 8402270 + RLTR25A ERVK LTR
AL591174.13 117723 117752 8402271 + (CAAA)n Simple_repeat
AL591174.13 117757 117849 8402272 - B3 B2 SINE
AL591174.13 117861 117893 8402273 + (TC)n
AL591174.13 118430 118639 8402274 - B3 B2 SINE
AL591174.13 118903 118931 8402275 + (CAAAAA)n Simple_repeat
AL591174.13 119451 119586 8402276 - MER5B hAT-Charlie DNA
AL591174.13 120071 120101 8402277 + (TGGG)n
AL591174.13 122785 122804 8402278 + (A)n Simple_repeat
AL591174.13 124124 124222 8402279 - B1_Mur3 Alu SINE
AL591174.13 124141 124254 8402280 - MT2B ERVL LTR
AL591174.13 124256 124318 8402281 + L1ME3A L1
AL591174.13 125292 125437 8402282 + B1_Mus1 Alu SINE
AL591174.13 126492 126556 8402283 - ID4_ ID SINE
AL591174.13 126708 126781 8402284 + MIRc MIR SINE
AL591174.13 127989 128064 8402285 - ID_B1 B4 SINE
AL591174.13 128255 128446 8402286 + B2_Mm1a B2 SINE
AL591174.13 128582 128789 8402287 + B3 B2 SINE
AL591174.13 128810 128947 8402288 - B1_Mus1 Alu SINE
AL591174.13 129002 129087 8402289 + B1F1 Alu SINE
AL591174.13 129242 129339 8402290 - PB1D7 Alu SINE
AL591174.13 129387 129535 8402291 - MER5A hAT-Charlie DNA
AL591174.13 130228 130360 8402292 + B1_Mur2 Alu SINE
AL591174.13 130361 130400 8402293 + B4 B4 SINE
AL591174.13 130525 130714 8402294 - B4 B4 SINE
AL591174.13 131937 131985 8402295 + (TG)n
AL591174.13 132287 132315 8402296 + AT_rich Low_complexity
AL591174.13 133822 133906 8402297 + L2 L2 LINE
AL591174.13 134101 134418 8402298 + MTD ERVL-MaLR LTR
AL591174.13 134419 134626 8402299 - B3 B2 SINE
AL591174.13 134627 134683 8402298 + MTD ERVL-MaLR LTR
AL591174.13 134795 134965 8402301 + RSINE1 B4 SINE
AL591174.13 135302 135361 8402302 - B3A B2 SINE
AL591174.13 135384 135449 8402303 - ID4 ID SINE
AL591174.13 135877 136015 8402304 + B1_Mur2 Alu SINE
AL591174.13 136016 136063 8402305 + (TGAA)n Simple_repeat
AL591174.13 136402 136476 8402306 - MT2B ERVL LTR
AL591174.13 136415 136477 8402307 - B1F2 Alu SINE
AL591174.13 137176 137363 8402308 + B2_Mm1a B2 SINE
AL591174.13 137662 137704 8402309 + ID2 ID SINE
AL591174.13 137749 138156 8402310 - Lx4A L1
AL591174.13 138547 138572 8402311 - L1MA6 L1
AL591174.13 138573 138675 8402312 - PB1D9 Alu SINE
AL591174.13 138676 138798 8402311 - L1MA6 L1
AL591174.13 138826 139162 8402314 + ORR1A4 ERVL-MaLR LTR
AL591174.13 139165 139490 8402311 - L1MA6 L1
AL591174.13 139862 139899 8402316 + (CAAA)n Simple_repeat
AL591174.13 139981 140133 8402317 - B1_Mur2 Alu SINE
AL591174.13 141028 141176 8402318 + RSINE1 B4 SINE
AL591174.13 141552 141751 8402319 + B3 B2 SINE
AL591174.13 141808 141957 8402320 + B1_Mus1 Alu SINE
AL591174.13 142411 142556 8402321 - B1F Alu SINE
AL591174.13 142629 142703 8402322 - ID4_ ID SINE
AL591174.13 142740 142964 8402323 - ID_B1 B4 SINE
AL591174.13 142967 143108 8402324 - B1F Alu SINE
AL591174.13 143169 143208 8402325 + (TCCC)n
AL591174.13 143210 143357 8402326 - B1_Mus1 Alu SINE
AL591174.13 143360 143545 8402327 - L1MA8 L1
AL591174.13 143991 144006 8402328 + B4 B4 SINE
AL591174.13 144007 144141 8402329 + B1_Mur1 Alu SINE
AL591174.13 144256 144463 8402330 - B3 B2 SINE
AL591174.13 145436 145624 8402331 + B2_Mm2 B2 SINE
AL591174.13 146468 146520 8402332 + Charlie15a hAT-Charlie DNA
AL591174.13 146561 146684 8402333 + B3 B2 SINE
AL591174.13 146754 146819 8402334 - PB1D10 Alu SINE
AL591174.13 146825 146849 8402335 + AT_rich Low_complexity
AL591174.13 147015 147145 8402336 + B1_Mus1 Alu SINE
AL591174.13 147146 147196 8402337 + (A)n Simple_repeat
AL591174.13 148081 148118 8402338 + (TG)n
AL591174.13 148136 148202 8402339 - tRNA-Ala-GCY_ tRNA
AL591174.13 148143 148203 8402340 - ID4 ID SINE
AL591174.13 148204 148331 8402341 - ID_B1 B4 SINE
AL591174.13 148741 149086 8402342 + RLTR9A3 ERVK LTR
AL591174.13 149158 149352 8402343 + B3 B2 SINE
AL591174.13 149354 149385 8402344 + (CAAA)n Simple_repeat
AL591174.13 149600 149679 8402345 - RSINE1 B4 SINE
AL591174.13 149907 149933 8402346 + (TC)n
AL591174.13 149934 149980 8402347 + (CA)n Simple_repeat
AL591174.13 150073 150097 8402348 + AT_rich Low_complexity
AL591174.13 150099 150273 8402349 - B3 B2 SINE
AL591174.13 151261 151328 8402350 - ID4_ ID SINE
AL591174.13 151541 151677 8402351 - B1_Mur4 Alu SINE
AL591174.13 151884 151993 8402352 - B1_Mur3 Alu SINE
AL591174.13 152530 152664 8402353 - B1_Mur2 Alu SINE
AL591174.13 153272 153497 8402354 + B3 B2 SINE
AL591174.13 153576 153683 8402355 - B1_Mur1 Alu SINE
AL591174.13 154732 154932 8402356 + B3 B2 SINE
AL591174.13 154935 155082 8402357 + RSINE1 B4 SINE
AL591174.13 155061 155155 8402358 - RLTR17B_Mm ERVK LTR
AL591174.13 156338 156492 8402359 - B3 B2 SINE
AL591174.13 156631 156727 8402360 - B3 B2 SINE
AL591174.13 156751 157078 8402361 + MLTR31D_MM ERVK LTR
AL591174.13 157079 158283 8402362 + Lx L1
AL591174.13 158289 158488 8402361 + MLTR31D_MM ERVK LTR
AL591174.13 158600 158716 8402364 + B1_Mus1 Alu SINE
AL591174.13 158894 159048 8402365 - RSINE1 B4 SINE
AL591174.13 159138 159314 8402366 - B3 B2 SINE
AL591174.13 159444 159481 8402367 + AT_rich Low_complexity
AL591174.13 160282 160494 8402368 - B3 B2 SINE
AL591174.13 160682 160721 8402369 + AT_rich Low_complexity
AL591174.13 160993 161012 8402370 + (A)n Simple_repeat
AL591174.13 161702 161828 8402371 + B1_Mur2 Alu SINE
AL591174.13 161841 161967 8402372 + B1_Mus1 Alu SINE
AL591174.13 162229 162314 8402373 + ID4_ ID SINE
AL591174.13 162330 162351 8402374 + (CACCC)n Simple_repeat
AL591174.13 162368 162452 8402375 - L1Md_T L1
AL591174.13 162690 162766 8402376 + B1F2 Alu SINE
AL591174.13 163114 163237 8402377 - B1_Mur2 Alu SINE
AL591174.13 163272 163296 8402378 + (TG)n
AL591174.13 163298 163416 8402379 - RSINE1 B4 SINE
AL591174.13 163651 163710 8402380 + B1F Alu SINE
AL591174.13 164456 164481 8402381 + AT_rich Low_complexity
AL591174.13 165170 165189 8402382 + (T)n
AL591174.13 165224 165419 8402383 - B3 B2 SINE
AL591174.13 166122 166302 8402384 - RSINE1 B4 SINE
AL591174.13 166808 166927 8402385 - B1_Mur4 Alu SINE
AL591174.13 167147 167626 8402386 - MLTR11B ERVK LTR
AL591174.13 167873 168729 8402387 + RMER1A Other
AL591174.13 168730 168870 8402388 + B1_Mus1 Alu SINE
AL591174.13 168872 168896 8402389 + (CCAA)n Simple_repeat
AL591174.13 169766 169972 8402390 + ID_B1 B4 SINE
AL591174.13 169975 170089 8402391 + Lx5c L1
AL591174.13 170285 170309 8402392 + AT_rich Low_complexity
AL591174.13 170287 170324 8402393 + AT_rich Low_complexity
AL591174.13 172323 172397 8402394 + MER5A1 hAT-Charlie DNA
AL591174.13 172588 172647 8402395 + B1_Mus2 Alu SINE
AL591174.13 175230 175400 8402396 + B3 B2 SINE
AL591174.13 175406 175496 8402397 + PB1D7 Alu SINE
AL591174.13 175614 175765 8402398 - B3A B2 SINE
AL591174.13 175768 175790 8402399 - B2_Mm2 B2 SINE
AL591174.13 175791 175940 8402400 + (CCTA)n
AL591174.13 175941 176085 8402399 - B2_Mm2 B2 SINE
AL591174.13 176115 176313 8402402 - B3 B2 SINE
AL591174.13 176492 176664 8402403 - B2_Mm2 B2 SINE
AL591174.13 176782 176980 8402404 - B3 B2 SINE
AL591174.13 177226 177355 8402405 - B1F2 Alu SINE
AL591174.13 178562 178664 8402406 - PB1D10 Alu SINE
AL591174.13 178583 178682 8402407 - MT2B2 ERVL LTR
AL591174.13 178758 178791 8402408 + AT_rich Low_complexity
AL591174.13 178826 178971 8402409 + B1_Mm Alu SINE
AL591174.13 179284 179390 8402410 - B1_Mur2 Alu SINE
AL591174.13 179332 179450 8402411 - MT2B ERVL LTR
AL591174.13 179822 179962 8402412 - B1F2 Alu SINE
AL591174.13 180008 180153 8402413 - B1_Mur1 Alu SINE
AL591174.13 180293 180354 8402414 - ID4 ID SINE
AL591174.13 180441 180486 8402415 + (CAAAAA)n Simple_repeat
AL591174.13 180838 180875 8402416 - BC1_Mm ID SINE
AL591174.13 182991 183016 8402417 + (CAAA)n Simple_repeat
AL591174.13 183625 183754 8402418 - B1_Mur3 Alu SINE
AL591174.13 183978 184082 8402419 - B3A B2 SINE
AL591174.13 184102 184196 8402420 + (TA)n Simple_repeat
AL591174.13 185422 185445 8402421 + (CCA)n
AL591174.13 186774 186971 8402422 - B3 B2 SINE
AL591174.13 186975 187022 8402423 + (TCC)n
AL591174.13 187070 187193 8402424 - RSINE1 B4 SINE
AL591174.13 187294 187496 8402425 - B3A B2 SINE
AL591174.13 187821 187862 8402426 + (CTA)n
AL591174.13 187868 187926 8402427 + AT_rich Low_complexity
AL591174.13 187931 188061 8402428 - B1_Mur3 Alu SINE
AL591174.13 188954 189092 8402429 + B1_Mur3 Alu SINE
AL591174.13 189457 189480 8402430 + (A)n Simple_repeat
AL591174.13 189861 189879 8402431 + B3 B2 SINE
AL591174.13 189880 190029 8402432 + RSINE1 B4 SINE
AL591174.13 190030 190047 8402431 + B3 B2 SINE
AL591174.13 190067 190333 8402434 - Lx3A L1
AL591174.13 190337 190412 8402434 + Lx3A L1
AL591174.13 190413 190455 8402436 + (TAA)n Simple_repeat
AL591174.13 190456 191526 8402434 + Lx3A L1
AL591174.13 191527 191557 8402438 + (TAAA)n Simple_repeat
AL591174.13 191927 192157 8402439 + B3 B2 SINE
AL591174.13 192259 192462 8402440 + B3 B2 SINE
AL591174.13 192463 192741 8402441 + L1_Mus3 L1
AL591174.13 192730 194052 8402441 + L1_Mus3 L1
AL591174.13 194064 194239 8402443 + B2_Mm1t B2 SINE
AL591174.13 194268 194375 8402444 + B2_Mm2 B2 SINE
AL591174.13 194818 194881 8402445 + B1_Mus1 Alu SINE
AL591174.13 195089 195321 8402446 + MTEb ERVL-MaLR LTR
AL591174.13 196202 196346 8402447 - B1_Mur3 Alu SINE
AL591174.13 196353 196504 8402448 - ID_B1 B4 SINE
AL591174.13 196740 196850 8402449 + PB1D9 Alu SINE
AL591174.13 197451 197494 8402450 + (A)n Simple_repeat
AL591174.13 198313 198406 8402451 - RLTR31D_MM ERVK LTR
AL591174.13 201291 201581 8402452 - B4A B4 SINE
AL591174.13 201655 201789 8402453 - B1_Mur1 Alu SINE
AL591174.13 201831 201858 8402454 + AT_rich Low_complexity
AL591174.13 202533 202688 8402455 + MER47A TcMar-Tigger DNA
AL591174.13 202749 202838 8402456 + MIRc MIR SINE
AL591174.13 203019 203156 8402457 + B1_Mur2 Alu SINE
AL591174.13 203424 203554 8402458 + RSINE1 B4 SINE
AL591174.13 203555 203602 8402459 + (CA)n Simple_repeat
AL591174.13 203603 203817 8402460 + B3 B2 SINE
AL591174.13 203963 204105 8402461 - B1_Mur4 Alu SINE
AL591174.13 204493 204649 8402462 - B2_Mm2 B2 SINE
AL591174.13 204999 205097 8402463 - PB1D11 Alu SINE
AL591174.13 205098 205147 8402464 - MT2B2 ERVL LTR
AL591174.13 205318 205379 8402465 + B3A B2 SINE
AL591174.13 504 523 14802246 N DUST
AL591174.13 541 580 14802247 N DUST
AL591174.13 2673 2688 14802248 N DUST
AL591174.13 3054 3070 14802249 N DUST
AL591174.13 4897 4903 14802250 N DUST
AL591174.13 6187 6194 14802251 N DUST
AL591174.13 6734 6751 14802252 N DUST
AL591174.13 8336 8352 14802253 N DUST
AL591174.13 11602 11610 14802254 N DUST
AL591174.13 12423 12541 14802255 N DUST
AL591174.13 12606 12612 14802256 N DUST
AL591174.13 13002 13065 14802257 N DUST
AL591174.13 13212 13291 14802258 N DUST
AL591174.13 15860 15877 14802259 N DUST
AL591174.13 16235 16241 14802260 N DUST
AL591174.13 17043 17054 14802261 N DUST
AL591174.13 17425 17451 14802262 N DUST
AL591174.13 17616 17730 14802263 N DUST
AL591174.13 17933 17952 14802264 N DUST
AL591174.13 19179 19187 14802265 N DUST
AL591174.13 19746 19752 14802266 N DUST
AL591174.13 19851 19930 14802267 N DUST
AL591174.13 20935 20950 14802268 N DUST
AL591174.13 21315 21347 14802269 N DUST
AL591174.13 23524 23538 14802270 N DUST
AL591174.13 24378 24436 14802271 N DUST
AL591174.13 25586 25597 14802272 N DUST
AL591174.13 27131 27137 14802273 N DUST
AL591174.13 27149 27155 14802274 N DUST
AL591174.13 28590 28596 14802275 N DUST
AL591174.13 28747 29006 14802276 N DUST
AL591174.13 30253 30264 14802277 N DUST
AL591174.13 30693 30699 14802278 N DUST
AL591174.13 33581 33587 14802279 N DUST
AL591174.13 33807 33877 14802280 N DUST
AL591174.13 33963 34007 14802281 N DUST
AL591174.13 34089 34128 14802282 N DUST
AL591174.13 35958 35973 14802283 N DUST
AL591174.13 36214 36223 14802284 N DUST
AL591174.13 36227 36237 14802285 N DUST
AL591174.13 36430 36447 14802286 N DUST
AL591174.13 36583 36617 14802287 N DUST
AL591174.13 40007 40023 14802288 N DUST
AL591174.13 41819 41926 14802289 N DUST
AL591174.13 42919 42925 14802290 N DUST
AL591174.13 43556 43565 14802291 N DUST
AL591174.13 43869 43887 14802292 N DUST
AL591174.13 43911 43953 14802293 N DUST
AL591174.13 44215 44225 14802294 N DUST
AL591174.13 44709 44772 14802295 N DUST
AL591174.13 45527 45534 14802296 N DUST
AL591174.13 46202 46245 14802297 N DUST
AL591174.13 46589 46605 14802298 N DUST
AL591174.13 47710 47757 14802299 N DUST
AL591174.13 47829 47881 14802300 N DUST
AL591174.13 48799 48837 14802301 N DUST
AL591174.13 49309 49320 14802302 N DUST
AL591174.13 49622 49628 14802303 N DUST
AL591174.13 50035 50055 14802304 N DUST
AL591174.13 50983 50996 14802305 N DUST
AL591174.13 55277 55360 14802306 N DUST
AL591174.13 55565 55573 14802307 N DUST
AL591174.13 55790 55805 14802308 N DUST
AL591174.13 58483 58909 14802309 N DUST
AL591174.13 59609 59622 14802310 N DUST
AL591174.13 60400 60406 14802311 N DUST
AL591174.13 60917 60963 14802312 N DUST
AL591174.13 61078 61109 14802313 N DUST
AL591174.13 62091 62097 14802314 N DUST
AL591174.13 62889 62898 14802315 N DUST
AL591174.13 63712 63764 14802316 N DUST
AL591174.13 63768 63774 14802317 N DUST
AL591174.13 63987 64020 14802318 N DUST
AL591174.13 64284 64392 14802319 N DUST
AL591174.13 64679 64753 14802320 N DUST
AL591174.13 64835 64852 14802321 N DUST
AL591174.13 64892 64948 14802322 N DUST
AL591174.13 66021 66097 14802323 N DUST
AL591174.13 66327 66350 14802324 N DUST
AL591174.13 67382 67388 14802325 N DUST
AL591174.13 68213 68229 14802326 N DUST
AL591174.13 68424 68441 14802327 N DUST
AL591174.13 69520 69564 14802328 N DUST
AL591174.13 70287 70293 14802329 N DUST
AL591174.13 70297 70303 14802330 N DUST
AL591174.13 70679 70711 14802331 N DUST
AL591174.13 70719 70742 14802332 N DUST
AL591174.13 71298 71398 14802333 N DUST
AL591174.13 72799 72805 14802334 N DUST
AL591174.13 73046 73076 14802335 N DUST
AL591174.13 73133 73220 14802336 N DUST
AL591174.13 73952 73958 14802337 N DUST
AL591174.13 74421 74463 14802338 N DUST
AL591174.13 76502 76515 14802339 N DUST
AL591174.13 78205 78245 14802340 N DUST
AL591174.13 78563 78569 14802341 N DUST
AL591174.13 78896 78940 14802342 N DUST
AL591174.13 79070 79091 14802343 N DUST
AL591174.13 79917 79966 14802344 N DUST
AL591174.13 80733 80740 14802345 N DUST
AL591174.13 80756 80767 14802346 N DUST
AL591174.13 80816 80822 14802347 N DUST
AL591174.13 81710 81780 14802348 N DUST
AL591174.13 82326 82351 14802349 N DUST
AL591174.13 82579 82618 14802350 N DUST
AL591174.13 82888 82933 14802351 N DUST
AL591174.13 82993 83072 14802352 N DUST
AL591174.13 83154 83166 14802353 N DUST
AL591174.13 83924 83949 14802354 N DUST
AL591174.13 84755 84827 14802355 N DUST
AL591174.13 85013 85021 14802356 N DUST
AL591174.13 86223 86229 14802357 N DUST
AL591174.13 86778 86784 14802358 N DUST
AL591174.13 86827 86891 14802359 N DUST
AL591174.13 86968 87002 14802360 N DUST
AL591174.13 88887 88893 14802361 N DUST
AL591174.13 89422 89463 14802362 N DUST
AL591174.13 89470 89476 14802363 N DUST
AL591174.13 90520 90582 14802364 N DUST
AL591174.13 91140 91146 14802365 N DUST
AL591174.13 91829 91899 14802366 N DUST
AL591174.13 92229 92235 14802367 N DUST
AL591174.13 92454 92484 14802368 N DUST
AL591174.13 94703 94717 14802369 N DUST
AL591174.13 94808 94835 14802370 N DUST
AL591174.13 95236 95273 14802371 N DUST
AL591174.13 95284 95367 14802372 N DUST
AL591174.13 97120 97128 14802373 N DUST
AL591174.13 97253 97262 14802374 N DUST
AL591174.13 97517 97528 14802375 N DUST
AL591174.13 98548 98575 14802376 N DUST
AL591174.13 98714 98754 14802377 N DUST
AL591174.13 98992 99032 14802378 N DUST
AL591174.13 99072 99137 14802379 N DUST
AL591174.13 99584 100123 14802380 N DUST
AL591174.13 100649 100662 14802381 N DUST
AL591174.13 101556 101562 14802382 N DUST
AL591174.13 101698 101719 14802383 N DUST
AL591174.13 102461 102467 14802384 N DUST
AL591174.13 102672 102702 14802385 N DUST
AL591174.13 102704 102715 14802386 N DUST
AL591174.13 102723 102730 14802387 N DUST
AL591174.13 102861 102867 14802388 N DUST
AL591174.13 103768 103842 14802389 N DUST
AL591174.13 104916 105235 14802390 N DUST
AL591174.13 106481 106504 14802391 N DUST
AL591174.13 107105 107117 14802392 N DUST
AL591174.13 107299 107371 14802393 N DUST
AL591174.13 107521 107531 14802394 N DUST
AL591174.13 108183 108198 14802395 N DUST
AL591174.13 108301 108331 14802396 N DUST
AL591174.13 108333 108357 14802397 N DUST
AL591174.13 110316 110411 14802398 N DUST
AL591174.13 110489 110529 14802399 N DUST
AL591174.13 110590 110602 14802400 N DUST
AL591174.13 111622 111649 14802401 N DUST
AL591174.13 111687 111718 14802402 N DUST
AL591174.13 113335 113393 14802403 N DUST
AL591174.13 113778 113864 14802404 N DUST
AL591174.13 114173 114179 14802405 N DUST
AL591174.13 114515 114590 14802406 N DUST
AL591174.13 115696 115703 14802407 N DUST
AL591174.13 117557 117563 14802408 N DUST
AL591174.13 117723 117752 14802409 N DUST
AL591174.13 117861 117893 14802410 N DUST
AL591174.13 118875 118883 14802411 N DUST
AL591174.13 118901 118931 14802412 N DUST
AL591174.13 120059 120101 14802413 N DUST
AL591174.13 120509 120517 14802414 N DUST
AL591174.13 120608 120627 14802415 N DUST
AL591174.13 120877 120893 14802416 N DUST
AL591174.13 121632 121638 14802417 N DUST
AL591174.13 122490 122504 14802418 N DUST
AL591174.13 122550 122556 14802419 N DUST
AL591174.13 122785 122804 14802420 N DUST
AL591174.13 124902 124910 14802421 N DUST
AL591174.13 125428 125474 14802422 N DUST
AL591174.13 127985 128000 14802423 N DUST
AL591174.13 128063 128077 14802424 N DUST
AL591174.13 128240 128247 14802425 N DUST
AL591174.13 128433 128443 14802426 N DUST
AL591174.13 128776 128795 14802427 N DUST
AL591174.13 129239 129245 14802428 N DUST
AL591174.13 130493 130507 14802429 N DUST
AL591174.13 130724 130730 14802430 N DUST
AL591174.13 131446 131453 14802431 N DUST
AL591174.13 131540 131551 14802432 N DUST
AL591174.13 131937 131985 14802433 N DUST
AL591174.13 132047 132053 14802434 N DUST
AL591174.13 132450 132459 14802435 N DUST
AL591174.13 134401 134426 14802436 N DUST
AL591174.13 135110 135145 14802437 N DUST
AL591174.13 136016 136060 14802438 N DUST
AL591174.13 137349 137360 14802439 N DUST
AL591174.13 137716 137769 14802440 N DUST
AL591174.13 137784 137834 14802441 N DUST
AL591174.13 139857 139902 14802442 N DUST
AL591174.13 141932 141970 14802443 N DUST
AL591174.13 142085 142091 14802444 N DUST
AL591174.13 142395 142422 14802445 N DUST
AL591174.13 142629 142635 14802446 N DUST
AL591174.13 142926 142932 14802447 N DUST
AL591174.13 143164 143221 14802448 N DUST
AL591174.13 143695 143709 14802449 N DUST
AL591174.13 145617 145624 14802450 N DUST
AL591174.13 146164 146177 14802451 N DUST
AL591174.13 146705 146758 14802452 N DUST
AL591174.13 147134 147196 14802453 N DUST
AL591174.13 148081 148118 14802454 N DUST
AL591174.13 149354 149385 14802455 N DUST
AL591174.13 149897 149903 14802456 N DUST
AL591174.13 149907 149980 14802457 N DUST
AL591174.13 150088 150096 14802458 N DUST
AL591174.13 150651 150657 14802459 N DUST
AL591174.13 151524 151539 14802460 N DUST
AL591174.13 151702 151708 14802461 N DUST
AL591174.13 151813 151887 14802462 N DUST
AL591174.13 152519 152540 14802463 N DUST
AL591174.13 152719 152725 14802464 N DUST
AL591174.13 153576 153585 14802465 N DUST
AL591174.13 155094 155129 14802466 N DUST
AL591174.13 158275 158292 14802467 N DUST
AL591174.13 158575 158581 14802468 N DUST
AL591174.13 158885 158892 14802469 N DUST
AL591174.13 159059 159065 14802470 N DUST
AL591174.13 159471 159480 14802471 N DUST
AL591174.13 160232 160238 14802472 N DUST
AL591174.13 160836 160842 14802473 N DUST
AL591174.13 160993 161012 14802474 N DUST
AL591174.13 162326 162352 14802475 N DUST
AL591174.13 162367 162385 14802476 N DUST
AL591174.13 163272 163296 14802477 N DUST
AL591174.13 163422 163429 14802478 N DUST
AL591174.13 164465 164481 14802479 N DUST
AL591174.13 164921 164928 14802480 N DUST
AL591174.13 165009 165015 14802481 N DUST
AL591174.13 165170 165189 14802482 N DUST
AL591174.13 166052 166058 14802483 N DUST
AL591174.13 166435 166441 14802484 N DUST
AL591174.13 167762 167842 14802485 N DUST
AL591174.13 167862 167870 14802486 N DUST
AL591174.13 168571 168627 14802487 N DUST
AL591174.13 168865 168932 14802488 N DUST
AL591174.13 169260 169266 14802489 N DUST
AL591174.13 170093 170125 14802490 N DUST
AL591174.13 170287 170324 14802491 N DUST
AL591174.13 171526 171548 14802492 N DUST
AL591174.13 171970 171979 14802493 N DUST
AL591174.13 172399 172408 14802494 N DUST
AL591174.13 173345 173351 14802495 N DUST
AL591174.13 175611 175626 14802496 N DUST
AL591174.13 175764 175787 14802497 N DUST
AL591174.13 175789 175937 14802498 N DUST
AL591174.13 177014 177021 14802499 N DUST
AL591174.13 178548 178562 14802500 N DUST
AL591174.13 178961 178986 14802501 N DUST
AL591174.13 179374 179421 14802502 N DUST
AL591174.13 179539 179553 14802503 N DUST
AL591174.13 179557 179566 14802504 N DUST
AL591174.13 180439 180495 14802505 N DUST
AL591174.13 181029 181038 14802506 N DUST
AL591174.13 181072 181079 14802507 N DUST
AL591174.13 181893 181899 14802508 N DUST
AL591174.13 182312 182354 14802509 N DUST
AL591174.13 182627 182633 14802510 N DUST
AL591174.13 182873 182879 14802511 N DUST
AL591174.13 182983 183016 14802512 N DUST
AL591174.13 183817 183823 14802513 N DUST
AL591174.13 183938 184035 14802514 N DUST
AL591174.13 184102 184196 14802515 N DUST
AL591174.13 184470 184485 14802516 N DUST
AL591174.13 185420 185445 14802517 N DUST
AL591174.13 186847 186860 14802518 N DUST
AL591174.13 186968 187022 14802519 N DUST
AL591174.13 187099 187105 14802520 N DUST
AL591174.13 187276 187282 14802521 N DUST
AL591174.13 187821 187926 14802522 N DUST
AL591174.13 188155 188161 14802523 N DUST
AL591174.13 188690 188764 14802524 N DUST
AL591174.13 188865 188925 14802525 N DUST
AL591174.13 189067 189127 14802526 N DUST
AL591174.13 189380 189391 14802527 N DUST
AL591174.13 189457 189480 14802528 N DUST
AL591174.13 190017 190048 14802529 N DUST
AL591174.13 190413 190455 14802530 N DUST
AL591174.13 190581 190627 14802531 N DUST
AL591174.13 191413 191459 14802532 N DUST
AL591174.13 191508 191611 14802533 N DUST
AL591174.13 192403 192462 14802534 N DUST
AL591174.13 192772 192781 14802535 N DUST
AL591174.13 192844 192850 14802536 N DUST
AL591174.13 193897 193966 14802537 N DUST
AL591174.13 194011 194055 14802538 N DUST
AL591174.13 194347 194390 14802539 N DUST
AL591174.13 194877 194898 14802540 N DUST
AL591174.13 195361 195367 14802541 N DUST
AL591174.13 196183 196213 14802542 N DUST
AL591174.13 196601 196665 14802543 N DUST
AL591174.13 197451 197494 14802544 N DUST
AL591174.13 197770 197808 14802545 N DUST
AL591174.13 198153 198160 14802546 N DUST
AL591174.13 198315 198427 14802547 N DUST
AL591174.13 200163 200172 14802548 N DUST
AL591174.13 200621 200648 14802549 N DUST
AL591174.13 201160 201166 14802550 N DUST
AL591174.13 201225 201238 14802551 N DUST
AL591174.13 201489 201500 14802552 N DUST
AL591174.13 201805 201812 14802553 N DUST
AL591174.13 202531 202537 14802554 N DUST
AL591174.13 203555 203602 14802555 N DUST
AL591174.13 203799 203891 14802556 N DUST
AL591174.13 203957 203972 14802557 N DUST
AL591174.13 204188 204201 14802558 N DUST
AL591174.13 204662 204668 14802559 N DUST
AL591174.13 204850 204875 14802560 N DUST
AL591174.13 205244 205250 14802561 N DUST