Genotyping
PubMed Nucleotide Protein Genome Taxonomy Structure PopSet

 

Resources:

Retroviruses

Reference sets:

Retroviruses
Hepatitis B
Hepatitis C
Poliovirus

Download list of reference sets

Help

Tools:

Genotyping

External links:

Division of AIDS at NIAID

LANL HIV Sequence Database

Stanford HIV RT and Protease Gene Database

 

    This tool helps identify the genotype of a viral sequence. A window is slid along the query sequence and each window is compared by BLAST to each of the reference sequences for a particular virus. This approach is especially useful for the analysis of recombinant sequences.   (Try an example).

 
Select: 
Enter your query sequence as Accession/GI or FASTA
     
    Select background color: 
Please send questions and comments to info@ncbi.nlm.nih.gov