NCBI

Sequence Viewer 3.47.0

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Remote BAM files Demo

Introduction

These examples demonstrate visualization of BAM alignments in the NCBI Sequence Viewer.
Sequence Viewer supports three levels of zoom detail: coverage graph, match-mismatch pileup and display of BAM reads.
Sequence Viewer also supports grouping of reads by strand and haplotype.

Example 1

Homo sapiens: chromosome 19, assembly GRCh38.p14 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.40)
BAM file is hosted at http://ftp.ensembl.org/pub/data_files/homo_sapiens/GRCh38/rnaseq/GRCh38.illumina.brain.1.bam

Example 2

Homo sapiens: chromosome 22, assembly GRCh37.p13 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25)
BAM file is hosted at http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/wgEncodeUwRepliSeqBjG1bAlnRep1.bam