NCBI

Sequence Viewer 3.47.0

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Remote VCFtabix and plain VCF files Demo

Introduction

The example demonstrates visualization of remote (HTTP-based) VCFtabix and plain VCF files in NCBI Sequence Viewer.

Remote VCFtabix file example

Homo sapiens: chromosome 22, assembly GRCh37.p13 (https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.25)
VCFtabix file is hosted at https://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/VCF/common_all_20180423.vcf.gz

Remote plain VCF file example

Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome (https://www.ncbi.nlm.nih.gov/assembly/GCF_009858895.2)
plain VCF file is hosted at https://sra-pub-sars-cov2.s3.amazonaws.com/vcf/ERR4157963/ERR4157963.ref.snpeff.vcf