Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank).
Tsangaras K, Wales N, Sicheritz-Pontén T, Rasmussen S, Michaux J, Ishida Y, Morand S, Kampmann ML, Gilbert MT, Greenwood AD. PLoS One. 2014; 9(10):e109101. Epub 2014 Oct 2.