Protein Family Models for Protein (Select 2238915327) - Protein Family Models

Select item 4302151.

Carbamoyltransferase, Kae1-like Domain, second subdomain

Date:: 2024-08-14

Family Accession:: NF046761.1
Method:: HMM

Select item 4259382.

This domain is found in the HypF protein. In the structure it is one of the two subdomains of the Kae1 domain [1]. [1]. 22740694. Structural basis for the reaction mechanism of S-carbamoylation. of HypE by HypF in the maturation of [NiFe]-hydrogenases.. Shomura Y, Higuchi Y;. J Biol Chem. 2012;287:28409-28419. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF036810.5
Method:: HMM

Select item 4186323.

HypF finger

The HypF family of proteins are involved in the maturation and regulation of hydrogenase ([1]). In the N-terminus they appear to have two Zinc finger domains, as modelled by this family. [1]. 9492269. Rhodobacter capsulatus HypF is involved in regulation of. hydrogenase synthesis through the HupUV proteins.. Colbeau A, Elsen S, Tomiyama M, Zorin NA, Dimon B, Vignais PM;. Eur J Biochem 1998;251:65-71. (from Pfam)

GO Terms:

Molecular Function:: zinc ion binding (GO:0008270)

Date:: 2024-08-14

Family Accession:: NF019144.5
Method:: HMM

Select item 4123774.

Sua5/YciO/YrdC/YwlC family protein

This domain has been shown to bind preferentially to dsRNA [1]. The domain is found in SUA5 Swiss:P32579 as well as HypF and YrdC Swiss:P45748. It has also been shown to be required for telomere recombniation in yeast. [1]. 11206077. The structure of the yrdC gene product from Escherichia coli. reveals a new fold and suggests a role in RNA binding.. Teplova M, Tereshko V, Sanishvili R, Joachimiak A, Bushueva T,. Anderson WF, Egli M;. Protein Sci 2000;9:2557-2566.. [2]. 19287007. The universal YrdC/Sua5 family is required for the formation of. threonylcarbamoyladenosine in tRNA.. El Yacoubi B, Lyons B, Cruz Y, Reddy R, Nordin B, Agnelli F,. Williamson JR, Schimmel P, Swairjo MA, de Crecy-Lagard V;. Nucleic Acids Res. 2009;37:2894-2909.. [3]. 19884342. The Sua5 protein is essential for normal translational. regulation in yeast.. Lin CA, Ellis SR, True HL;. Mol Cell Biol. 2010;30:354-363.. [4]. 20309016. Sua5p is required for telomere recombination in Saccharomyces. cerevisiae.. Meng FL, Chen XF, Hu Y, Tang HB, Dang W, Zhou JQ;. Cell Res. 2010;20:495-498. (from Pfam)

GO Terms:

Molecular Function:: double-stranded RNA binding (GO:0003725)

Date:: 2024-08-14

Family Accession:: NF013468.5
Method:: HMM

Select item 4118475.

acylphosphatase

Date:: 2024-08-14

Family Accession:: NF012911.5
Method:: HMM

Select item 4064236.