Protein Family Models for Protein (Select 2504854352) - Protein Family Models

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Links from Protein

Items: 8

Select item 4235511.

right-handed parallel beta-helix repeat-containing protein

This region contains a parallel beta helix region that shares some similarity with Pectate lyases. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF024627.5
Method:: HMM

Select item 4161282.

NosD domain-containing protein

NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ) [1]. This region forms a parallel beta helix domain. [1]. 8626275. Identification and analysis of the dissimilatory nitrous oxide. reduction genes, nosRZDFY, of Rhizobium meliloti.. Holloway P, McCormick W, Watson RJ, Chan YK;. J Bacteriol 1996;178:1505-1514. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF016906.5
Method:: HMM

Select item 4021003.

new record, indexing in progress

Family Accession:

Select item 3916254.

new record, indexing in progress

Family Accession:

Select item 3593765.

new record, indexing in progress

Family Accession:

Select item 3531376.

new record, indexing in progress

Family Accession:

Select item 1474927.

parallel beta-helix repeat protein

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.