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Links from Protein

Items: 17

1.

integrase core domain-containing protein

GO Terms:
Biological Process:
DNA integration (GO:0015074)
Date:
2024-08-14
Family Accession:
NF025063.5
Method:
HMM
2.

IS3 family transposase

GO Terms:
Biological Process:
DNA integration (GO:0015074)
Date:
2024-08-14
Family Accession:
NF024729.5
Method:
HMM
3.

IS3 family transposase

This domain contains a predicted helix-turn-helix suggesting a DNA-binding function. (from Pfam)

Date:
2024-08-14
Family Accession:
NF024673.5
Method:
HMM
4.

DDE-type integrase/transposase/recombinase

Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1]. [1]. 7801124. Crystal structure of the catalytic domain of HIV-1 integrase:. similarity to other polynucleotidyl transferases [see comments]. Dyda F, Hickman AB, Jenkins TM, Engelman A, Craigie R, Davies. DR;. Science 1994;266:1981-1986. (from Pfam)

GO Terms:
Biological Process:
DNA integration (GO:0015074)
Date:
2024-08-14
Family Accession:
NF012870.5
Method:
HMM
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
Family Accession:
9.

IS3 family transposase

GO Terms:
Molecular Function:
transposase activity (GO:0004803)
Date:
2021-03-03
Family Accession:
NF033516.0
Method:
HMM
10.

IS3_IS3_ORF2.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012068.0
Method:
HMM
11.

IS3_IS150_ORF1.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012060.0
Method:
HMM
12.

IS3_IS51_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012075.0
Method:
HMM
13.

IS3_IS51_ORF2.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012074.0
Method:
HMM
14.

IS3_IS3_ORF1.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012066.0
Method:
HMM
15.

IS3_IS150_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012062.0
Method:
HMM
16.

IS3_IS3_combined.original: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012069.0
Method:
HMM
17.

IS3_IS150_ORF2.curated: hypothetical protein

Date:
2019-09-10
Family Accession:
NF012061.0
Method:
HMM
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