Protein Family Models for Protein (Select 487401829) - Protein Family Models

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Select item 4198051.

class I tRNA ligase family protein

This family includes methionyl tRNA synthetases. (from Pfam)

GO Terms:

Molecular Function:: nucleotide binding (GO:0000166)

Molecular Function:: aminoacyl-tRNA ligase activity (GO:0004812)

Molecular Function:: ATP binding (GO:0005524)

Biological Process:: tRNA aminoacylation for protein translation (GO:0006418)

Date:: 2024-08-14

Family Accession:: NF020892.5
Method:: HMM

Select item 4183602.

class I tRNA ligase family protein

This domain is found mainly hydrophobic tRNA synthetases. The domain binds to the anticodon of the tRNA ligase. [1]. 11114335. Structural basis for double-sieve discrimination of L-valine. from L-isoleucine and L-threonine by the complex of tRNA(Val). and valyl-tRNA synthetase.. Fukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG,. Yokoyama S;. Cell 2000;103:793-803. (from Pfam)

GO Terms:

Molecular Function:: aminoacyl-tRNA ligase activity (GO:0004812)

Biological Process:: tRNA aminoacylation for protein translation (GO:0006418)

Date:: 2024-08-14

Family Accession:: NF019869.5
Method:: HMM

Select item 4159833.

zinc finger domain-containing protein

This zinc binding domain is found at the C-terminus of isoleucyl tRNA synthetase and the enzyme Formamidopyrimidine-DNA glycosylase EC:3.2.2.23. (from Pfam)

GO Terms:

Molecular Function:: zinc ion binding (GO:0008270)

Date:: 2024-08-14

Family Accession:: NF018531.5
Method:: HMM

Select item 4126984.

tRNA synthetases class I (C) catalytic domain

This family includes only cysteinyl tRNA synthetases. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF013565.5
Method:: HMM

Select item 4109865.

class I tRNA ligase family protein

Other tRNA synthetase sub-families are too dissimilar to be included. Paper describing PDB structure 1a8h. [1]. 10673435. The 2.0 A crystal structure of Thermus thermophilus. methionyl-tRNA synthetase reveals two RNA-binding modules.. Sugiura I, Nureki O, Ugaji-Yoshikawa Y, Kuwabara S, Shimada A,. Tateno M, Lorber B, Giege R, Moras D, Yokoyama S, Konno M;. Structure. 2000;8:197-208.. Paper describing PDB structure 1f4l. [2]. 11243794. How methionyl-tRNA synthetase creates its amino acid recognition. pocket upon L-methionine binding.. Serre L, Verdon G, Choinowski T, Hervouet N, Risler JL, Zelwer. C;. J Mol Biol. 2001;306:863-876.. Paper describing PDB structure 1ffy. [3]. 10446055. Insights into editing from an ile-tRNA synthetase structure with. tRNAile and mupirocin.. Silvian LF, Wang J, Steitz TA;. Science. 1999;285:1074-1077.. Paper describing PDB structure 1gax. [4]. 11114335. Structural basis for double-sieve discrimination of L-valine. from L-isoleucine and L-threonine by the complex of tRNA(Val). and valyl-tRNA synthetase.. Fukai S, Nureki O, Sekine S, Shimada A, Tao J, Vassylyev DG,. Yokoyama S;. Cell 2000;103:793-803.. Paper describing PDB structure 1h3n. [5]. 10811626. The 2 A crystal structure of leucyl-tRNA synthetase and its. complex with a leucyl-adenylate analogue.. Cusack S, Yaremchuk A, Tukalo M;. EMBO J. 2000;19:2351-2361. (from Pfam)

GO Terms:

Molecular Function:: nucleotide binding (GO:0000166)

Molecular Function:: aminoacyl-tRNA ligase activity (GO:0004812)

Molecular Function:: ATP binding (GO:0005524)

Biological Process:: tRNA aminoacylation for protein translation (GO:0006418)

Date:: 2024-08-14

Family Accession:: NF012361.5
Method:: HMM

Select item 3979686.

new record, indexing in progress

Family Accession:

Select item 3958127.

new record, indexing in progress

Family Accession:

Select item 3951908.

new record, indexing in progress

Family Accession:

Select item 3891829.

new record, indexing in progress

Family Accession:

Select item 38906610.

new record, indexing in progress

Family Accession:

Select item 36386311.

new record, indexing in progress

Family Accession:

Select item 35422012.

new record, indexing in progress

Family Accession:

Select item 35309313.

new record, indexing in progress

Family Accession:

Select item 35178014.

new record, indexing in progress

Family Accession:

Select item 34695015.

new record, indexing in progress

Family Accession:

Select item 33949016.

isoleucine--tRNA ligase

isoleucine--tRNA ligase catalyzes the attachment of isoleucine to tRNA(Ile)

Date:: 2024-04-09

Family Accession:: 11414613
Method:: Sparcle

Select item 32737817.

new record, indexing in progress

Family Accession:

Select item 32460718.

new record, indexing in progress

Family Accession:

Select item 32327519.

new record, indexing in progress

Family Accession:

Select item 32314420.

new record, indexing in progress

Family Accession:

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