Protein Family Models

This is the catalytic domain of class A beta-lactamases [1]. It is closely related to Beta-lactamase, Pfam:PF00144, the serine beta-lactamase-like superfamily, which contains the distantly related Pfam:PF00905 and PF00768 D-alanyl-D-alanine carboxypeptidase. [1]. 19100272. Structure of PBP-A from Thermosynechococcus elongatus, a. penicillin-binding protein closely related to class A. beta-lactamases.. Urbach C, Evrard C, Pudzaitis V, Fastrez J, Soumillion P,. Declercq JP;. J Mol Biol. 2009;386:109-120. (from Pfam)

Date:

2024-08-14

Penicillin-binding protein 5 expressed by E. coli (Swiss:P04287) functions as a D-alanyl-D-alanine carboxypeptidase. It is composed of two domains that are oriented at approximately right angles to each other. The N-terminal domain (Pfam:PF00768) is the catalytic domain. The C-terminal domain featured in this family is organised into a sandwich of two anti-parallel beta-sheets, and has a relatively hydrophobic surface as compared to the N-terminal domain. Its precise function is unknown; it may mediate interactions with other cell wall-synthesising enzymes, thus allowing the protein to be recruited to areas of active cell wall synthesis. It may also function as a linker domain that positions the active site in the catalytic domain closer to the peptidoglycan layer, to allow it to interact with cell wall peptides [1]. [1]. 10967102. Crystal structure of a deacylation-defective mutant of. penicillin-binding protein 5 at 2.3-A resolution.. Davies C, White SW, Nicholas RA;. J Biol Chem 2001;276:616-623. (from Pfam)

Date:

2024-08-14

Date:

2024-08-14

D-alanyl-D-alanine carboxypeptidase family protein may remove C-terminal D-alanyl residues from sugar-peptide cell wall precursors

Date:

2024-05-17