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Links from Protein

Items: 10

1.

sugar nucleotide-binding protein

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide [1,2]. [1]. 12057193. Variation on a Theme of SDR. dTDP-6-Deoxy-L- lyxo-4-Hexulose. Reductase (RmlD) Shows a New Mg(2+)-Dependent Dimerization Mode.. Blankenfeldt W, Kerr ID, Giraud MF, McMiken HJ, Leonard G,. Whitfield C, Messner P, Graninger M, Naismith JH;. Structure (Camb) 2002;10:773-786.. [2]. 10802738. RmlC, the third enzyme of dTDP-L-rhamnose pathway, is a new. class of epimerase.. Giraud MF, Leonard GA, Field RA, Berlind C, Naismith JH;. Nat Struct Biol 2000;7:398-402. (from Pfam)

Date:
2024-08-14
Family Accession:
NF016228.5
Method:
HMM
2.

polysaccharide biosynthesis protein

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein (Swiss:P39853) [1], WalL protein (Swiss:O86159) mannosyl-transferase (Swiss:O05349) [2] and several putative epimerases (e.g. WbiI Swiss:O69130). [1]. 7961465. Sequence analysis and molecular characterization of genes. required for the biosynthesis of type 1 capsular polysaccharide. in Staphylococcus aureus.. Lin WS, Cunneen T, Lee CY;. J Bacteriol 1994;176:7005-7016.. [2]. 9079898. Identification of additional genes required for O-antigen. biosynthesis in Vibrio cholerae O1.. Fallarino A, Mavrangelos C, Stroeher UH, Manning PA;. J Bacteriol 1997;179:2147-2153. (from Pfam)

Date:
2024-08-14
Family Accession:
NF014740.5
Method:
HMM
3.

NAD-dependent epimerase/dehydratase family protein

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. [1]. 9174344. Structural analysis of UDP-sugar binding to UDP-galactose. 4-epimerase from Escherichia coli.. Thoden JB, Hegeman AD, Wesenberg G, Chapeau MC, Frey PA, Holden. HM;. Biochemistry 1997;36:6294-6304. (from Pfam)

GO Terms:
Molecular Function:
catalytic activity (GO:0003824)
Date:
2024-08-14
Family Accession:
NF013530.5
Method:
HMM
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.
new record, indexing in progress
Family Accession:
9.
new record, indexing in progress
Family Accession:
10.

dTDP-4-dehydrorhamnose reductase family protein

dTDP-4-dehydrorhamnose reductase family protein is an extended short-chain dehydrogenase similar to bacterial dTDP-4-dehydrorhamnose reductase, dTDP-4-keto-6-deoxy-D-glucose reductase, and mammalian S-adenosylmethionine synthase 2 subunit beta; in addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids

Date:
2024-05-22
Family Accession:
10142884
Method:
Sparcle
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