Protein Family Models for Protein (Select 506349191) - Protein Family Models

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Select item 4293371.

Elongation factor G domain 2

Date:: 2024-08-14

Family Accession:: NF046178.1
Method:: HMM

Select item 4257852.

Elongation Factor G, domain III

This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. [1]. 23636399. Structures of the human and Drosophila 80S ribosome.. Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M,. Wilson DN, Beckmann R;. Nature. 2013;497:80-85. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF025845.5
Method:: HMM

Select item 4151333.

Elongation factor G, domain IV

This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. (from Pfam)

GO Terms:

Molecular Function:: translation elongation factor activity (GO:0003746)

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-08-14

Family Accession:: NF015706.5
Method:: HMM

Select item 4142724.

EF-Tu/IF-2/RF-3 family GTPase

Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain. [1]. 7491491. Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu,. and a GTP analog.. Nissen P, Kjeldgaard M, Thirup S, Polekhina G, Reshetnikova L,. Clark BF, Nyborg J;. Science 1995;270:1464-1472. (from Pfam)

GO Terms:

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-08-14

Family Accession:: NF015126.5
Method:: HMM

Select item 4110745.

GTP-binding protein

This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Cryoelectron microscopy structure.. [1]. 9311785. Visualization of elongation factor Tu on the Escherichia coli. ribosome.. Stark H, Rodnina MV, Rinke-Appel J, Brimacombe R, Wintermeyer W,. van Heel M;. Nature 1997;389:403-406. (from Pfam)

GO Terms:

Molecular Function:: GTPase activity (GO:0003924)

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-08-14

Family Accession:: NF012239.5
Method:: HMM

Select item 4108476.

Elongation factor G C-terminus

This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF012882.5
Method:: HMM

Select item 4010857.