Distinct genetic and epigenetic signatures of colorectal cancers according to ethnic origin

Cancer Epidemiol Biomarkers Prev. 2012 Jan;21(1):202-11. doi: 10.1158/1055-9965.EPI-11-0662. Epub 2011 Oct 25.

Abstract

Background: The outcome of colorectal cancer varies depending on ethnic origin. Egyptian colorectal carcinoma is surprisingly young-age disease with high proportion of rectal and advanced stage cancers.

Methods: We characterized 69 sporadic Egyptian colorectal cancers for promoter methylation at 24 tumor suppressor genes, microsatellite instability, and expression of mismatch repair, p53, and β-catenin proteins. Data were compared with 80 Western colorectal carcinoma of sporadic and familial origin from Finland.

Results: Egyptian colorectal carcinomas showed significantly higher methylation of the microsatellite stable (MSS) tumors as reflected by the average number of methylated genes per case (P = 0.00002) and tumor suppressor gene methylator phenotype (TSGMP), defined here as methylation of ≥ 5 genes, (P = 0.0001) compared with the sporadic Western cancers. The TSGMP was associated with advanced stage in the Egyptian cancers (P = 0.0016). Four genes were differentially methylated between Egyptian and Western cases, of which the association of CDKN2B/p15 methylation with Egyptian origin was outstanding (P = 4.83 E-10). Egyptian carcinoma also showed significantly lower frequency of nuclear β-catenin localization than the sporadic Western cancers (P = 0.00006) but similar to that of the familial Western subset designated as familial colorectal cancer type X.

Conclusions: We show novel pathway in colon carcinogenesis marked by high methylation of MSS cancers, remarkable CDKN2B/p15 methylation, and low frequency of Wnt signaling activation.

Impact: Our findings highlight the possible effect of environmental exposures in carcinogenesis through DNA methylation and should have applications in prevention, molecular diagnosis, prognosis, and treatment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma / ethnology*
  • Adenocarcinoma / genetics*
  • Adenocarcinoma / metabolism
  • Adenocarcinoma / pathology
  • Adolescent
  • Adult
  • Age Factors
  • Aged
  • Colorectal Neoplasms / ethnology*
  • Colorectal Neoplasms / genetics*
  • Colorectal Neoplasms / metabolism
  • Colorectal Neoplasms / pathology
  • CpG Islands
  • Cyclin-Dependent Kinase Inhibitor p15 / genetics
  • DNA Methylation
  • Egypt
  • Epigenomics
  • Humans
  • Immunohistochemistry
  • Microsatellite Instability
  • Middle Aged
  • Promoter Regions, Genetic
  • Tumor Suppressor Protein p53 / biosynthesis
  • Tumor Suppressor Protein p53 / metabolism
  • Young Adult
  • beta Catenin / biosynthesis
  • beta Catenin / genetics

Substances

  • CDKN2B protein, human
  • CTNNB1 protein, human
  • Cyclin-Dependent Kinase Inhibitor p15
  • TP53 protein, human
  • Tumor Suppressor Protein p53
  • beta Catenin