Halobaculum magnesiiphilum sp. nov., a magnesium-dependent haloarchaeon isolated from commercial salt

Int J Syst Evol Microbiol. 2013 Mar;63(Pt 3):861-866. doi: 10.1099/ijs.0.037432-0. Epub 2012 May 18.

Abstract

Two extremely halophilic archaea, strains MGY-184(T) and MGY-205, were isolated from sea salt produced in Japan and rock salt imported from Bolivia, respectively. Both strains were pleomorphic, non-motile, Gram-negative and required more than 5 % (w/v) NaCl for growth, with optimum at 9-12 %, in the presence of 2 % (w/v) MgCl2 . 6H2O. In the presence of 18 % (w/v) MgCl2 . 6H2O, however, both strains showed growth even at 1.0 % (w/v) NaCl. Both strains possessed two 16S rRNA genes (rrnA and rrnB), and they revealed closest similarity to Halobaculum gomorrense JCM 9908(T), the single species with a validly published name of the genus Halobaculum, with similarity of 97.8 %. The rrnA and rrnB genes of both strains were 100 % similar. The rrnA genes were 97.6 % similar to the rrnB genes in both strains. DNA G+C contents of strains MGY-184(T) and MGY-205 were 67.0 and 67.4 mol%, respectively. Polar lipid analysis revealed that the two strains contained phosphatidylglycerol and phosphatidylglycerol phosphate methyl ester derived from C20C20 archaeol. The DNA-DNA hybridization value between the two strains was 70 % and both strains showed low levels of DNA-DNA relatedness (48-50 %) with Halobaculum gomorrense JCM 9908(T). Physiological and biochemical characteristics allowed differentiation of strains MGY-184(T) and MGY-205 from Halobaculum gomorrense JCM 9908(T). Therefore, strains MGY-184(T) and MGY-205 represent a novel species of the genus Halobaculum, for which the name Halobaculum magnesiiphilum sp. nov. is proposed; the type strain is MGY-184(T) ( = JCM 17821(T) = KCTC 4100(T)).

MeSH terms

  • Base Composition
  • Bolivia
  • DNA, Archaeal / genetics
  • Halobacteriaceae / classification*
  • Halobacteriaceae / genetics
  • Halobacteriaceae / isolation & purification
  • Japan
  • Magnesium / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Phosphatidylglycerols / analysis
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sodium Chloride*

Substances

  • DNA, Archaeal
  • Phosphatidylglycerols
  • RNA, Ribosomal, 16S
  • phosphatidylglycerophosphate
  • Sodium Chloride
  • Magnesium

Associated data

  • GENBANK/AB627357
  • GENBANK/AB627358
  • GENBANK/AB638780
  • GENBANK/AB638781