Identification of novel transmembrane proteins in scirrhous-type gastric cancer by the Escherichia coli ampicillin secretion trap (CAST) method: TM9SF3 participates in tumor invasion and serves as a prognostic factor

Pathobiology. 2014;81(3):138-48. doi: 10.1159/000357821. Epub 2014 Mar 8.

Abstract

Objective: Scirrhous-type gastric cancer (GC) is highly aggressive and has a poor prognosis due to rapid cancer cell infiltration accompanied by extensive stromal fibrosis. The aim of this study is to identify genes that encode transmembrane proteins frequently expressed in scirrhous-type GC.

Methods: We compared Escherichia coli ampicillin secretion trap (CAST) libraries from 2 human scirrhous-type GC tissues with a normal stomach CAST library. By sequencing 2,880 colonies from scirrhous CAST libraries, we identified a list of candidate genes.

Results: We focused on the TM9SF3 gene because it has the highest clone count, and immunohistochemical analysis demonstrated that 46 (50%) of 91 GC cases were positive for TM9SF3, which was observed frequently in scirrhous-type GC. TM9SF3 expression showed a significant correlation with the depth of invasion, tumor stage and undifferentiated GC. There was a strong correlation between TM9SF3 expression and poor patient outcome, which was validated in two separate cohorts by immunostaining and quantitative RT-PCR, respectively. Transient knockdown of the TM9SF3 gene by siRNA showed decreased tumor cell-invasive capacity.

Conclusion: Our results indicate that TM9SF3 might be a potential diagnostic and therapeutic target for scirrhous-type GC.

Publication types

  • Comparative Study
  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenocarcinoma, Scirrhous / diagnosis
  • Adenocarcinoma, Scirrhous / genetics
  • Adenocarcinoma, Scirrhous / physiopathology*
  • Aged
  • Ampicillin*
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / physiology
  • Carrier Proteins
  • Cell Line, Tumor
  • Cell Movement / genetics
  • Cell Movement / physiology
  • Escherichia coli*
  • Female
  • Gene Expression Regulation, Neoplastic / drug effects
  • Humans
  • Kaplan-Meier Estimate
  • Male
  • Membrane Proteins / genetics*
  • Membrane Proteins / physiology*
  • Neoplasm Invasiveness / genetics
  • Neoplasm Invasiveness / physiopathology
  • Prognosis
  • Protein Sorting Signals
  • RNA, Small Interfering / pharmacology
  • Sequence Analysis, DNA / methods*
  • Stomach Neoplasms / diagnosis
  • Stomach Neoplasms / genetics
  • Stomach Neoplasms / physiopathology*

Substances

  • Biomarkers, Tumor
  • Carrier Proteins
  • Membrane Proteins
  • Protein Sorting Signals
  • RNA, Small Interfering
  • TM9SF3 protein, human
  • Ampicillin