Structures and characterization of digoxin- and bufalin-bound Na+,K+-ATPase compared with the ouabain-bound complex

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):1755-60. doi: 10.1073/pnas.1422997112. Epub 2015 Jan 26.

Abstract

Cardiotonic steroids (CTSs) are specific and potent inhibitors of the Na(+),K(+)-ATPase, with highest affinity to the phosphoenzyme (E2P) forms. CTSs are comprised of a steroid core, which can be glycosylated, and a varying number of substituents, including a five- or six-membered lactone. These functionalities have specific influence on the binding properties. We report crystal structures of the Na(+),K(+)-ATPase in the E2P form in complex with bufalin (a nonglycosylated CTS with a six-membered lactone) and digoxin (a trisaccharide-conjugated CTS with a five-membered lactone) and compare their characteristics and binding kinetics with the previously described E2P-ouabain complex to derive specific details and the general mechanism of CTS binding and inhibition. CTSs block the extracellular cation exchange pathway, and cation-binding sites I and II are differently occupied: A single Mg(2+) is bound in site II of the digoxin and ouabain complexes, whereas both sites are occupied by K(+) in the E2P-bufalin complex. In all complexes, αM4 adopts a wound form, characteristic for the E2P state and favorable for high-affinity CTS binding. We conclude that the occupants of the cation-binding site and the type of the lactone substituent determine the arrangement of αM4 and hypothesize that winding/unwinding of αM4 represents a trigger for high-affinity CTS binding. We find that the level of glycosylation affects the depth of CTS binding and that the steroid core substituents fine tune the configuration of transmembrane helices αM1-2.

Keywords: Na/K-ATPase; cardiac glycosides; inhibitor; phosphoenzyme; structure.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Bufanolides / chemistry
  • Bufanolides / metabolism*
  • Crystallography, X-Ray
  • Digoxin / chemistry
  • Digoxin / metabolism*
  • Fluorescence
  • Glycosylation
  • Kinetics
  • Models, Molecular*
  • Ouabain / metabolism*
  • Protein Binding
  • Protein Conformation
  • Sodium-Potassium-Exchanging ATPase / metabolism*
  • Structure-Activity Relationship
  • Swine
  • X-Ray Diffraction

Substances

  • Bufanolides
  • Ouabain
  • Digoxin
  • Sodium-Potassium-Exchanging ATPase
  • bufalin

Associated data

  • PDB/4RES
  • PDB/4RET