Sphingomonaszeicaulis sp. nov., an endophytic bacterium isolated from maize root

Int J Syst Evol Microbiol. 2016 Sep;66(9):3755-3760. doi: 10.1099/ijsem.0.001262. Epub 2016 Jun 30.

Abstract

A novel Gram-staining-negative, aerobic and rod-shaped strain designated 541T was isolated from surface-sterilized root tissue of maize, collected from the Fangshan District of Beijing, People's Republic of China, and was subjected to a taxonomic study using a polyphasic approach. According to a phylogenetic tree based on 16S rRNA gene sequences, strain 541T represented a member of the genus Sphingomonas and clustered with Sphingomonas sanxanigenens DSM 19645T, with which it shared the highest 16S rRNA gene sequence similarity (98.8 %). The predominant respiratory quinone was ubiquinone-10 (Q-10), the major polyamine was sym-homospermidine and the major cellular fatty acids were C18 : 1ω7c (50.9 %), C16 : 0 (22.0 %) and C14 : 0 2-OH (11.4 %). The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylcholine and sphingoglycolipid. The DNA G+C content was 64.7 mol%. DNA-DNA relatedness between strain 541T and its closest phylogenetic relative Sphingomonas sanxanigenens DSM 19645T was 50.8 %. The results of physiological and biochemical tests and the differences in the fatty acid profiles allowed a clear phenotypic differentiation of strain 541T from closely related species of the genus Sphingomonas. Strain 541T represents a novel species within the genus Sphingomonas, for which the nameSphingomonas zeicaulis sp. nov. is proposed, with the type strain 541T (=CGMCC 1.15008T=DSM 100587T).

MeSH terms

  • Bacterial Typing Techniques
  • Beijing
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Phospholipids / chemistry
  • Phylogeny*
  • Plant Roots / microbiology*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Spermidine / analogs & derivatives
  • Spermidine / chemistry
  • Sphingomonas / classification*
  • Sphingomonas / genetics
  • Sphingomonas / isolation & purification
  • Spiro Compounds
  • Ubiquinone / chemistry
  • Zea mays / microbiology*

Substances

  • BAS 100
  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Spiro Compounds
  • sym-homospermidine
  • Ubiquinone
  • Ubiquinone Q2
  • Spermidine