Epigenetic regulation of the human ATP2A3 gene promoter in gastric and colon cancer cell lines

Mol Carcinog. 2019 Jun;58(6):887-897. doi: 10.1002/mc.22978. Epub 2019 Jan 29.

Abstract

The knowledge about the role of calcium-regulated pathways in cancer cell growth and differentiation could be useful for the development of new therapeutic approaches to diminish its mortality. The ATP2A genes encode for SERCA pumps, which modulate cytosolic Ca2+ concentration, regulating various cellular processes including cell growth. ATP2A3 gene transcriptional down-regulation has been reported in gastric and colon cancer, but there is still a lack of understanding about the epigenetic processes regulating its transcription. In this work, we report that butyrate, trichostatin A, and 5-azacytidine treatments increase SERCA3 expression, increased apoptosis, and decreased cell viability of the KATO-III gastric carcinoma cell line. We analyzed the methylation profile of the ATP2A3 gene promoter CpG island, finding clones with methylated status through -280 to -135 promoter region, harboring Sp1 and AP-2 binding sites, which could have a role in transcriptional repression. Post-translational modifications of histones show a major role in the ATP2A3 transcriptional regulation, and our results show histones marks linked to transcriptional repression associated with the -262 to -135 region, this repressive context changed to transcriptional permissive through SERCA3 re-expressing conditions. These results suggest that the nucleotide sequence from -280 to -135 position is an ATP2A3 epigenetic regulatory CpG region in KATO-III cells. Analyses of online-databases show a decreased SERCA3 expression in gastric and colon tumors, as well as overall survival results, showed that high SERCA3 expression could serve as a favorable prognostic marker for colon and gastric cancer patients.

Keywords: CpG methylation; SERCA3; butyrate; calcium ATPase; cancer biology; epigenetic regulation; gene expression; transcriptional regulation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cell Line, Tumor
  • Colonic Neoplasms / genetics*
  • CpG Islands
  • DNA Methylation
  • Down-Regulation
  • Epigenesis, Genetic*
  • Gene Expression Regulation, Neoplastic
  • Histones / metabolism
  • Humans
  • Promoter Regions, Genetic
  • Sarcoplasmic Reticulum Calcium-Transporting ATPases / chemistry
  • Sarcoplasmic Reticulum Calcium-Transporting ATPases / genetics*
  • Sarcoplasmic Reticulum Calcium-Transporting ATPases / metabolism
  • Sp1 Transcription Factor / metabolism
  • Stomach Neoplasms / genetics*
  • Survival Analysis

Substances

  • Histones
  • Sp1 Transcription Factor
  • SP1 protein, human
  • Sarcoplasmic Reticulum Calcium-Transporting ATPases
  • ATP2A3 protein, human