Pathogenic variants identified by whole-exome sequencing in 43 patients with epilepsy

Hum Genomics. 2020 Dec 7;14(1):44. doi: 10.1186/s40246-020-00294-0.

Abstract

Background: Epilepsy is a group of neurological disorders characterized by recurrent epileptic seizures. Epilepsy is affected by many factors, approximately 20-30% of cases are caused by acquired conditions, but in the remaining cases, genetic factors play an important role. Early establishment of a specific diagnosis is important to treat and manage this disease.

Methods: In this study, we have recruited 43 epileptic encephalopathy patients and the molecular genetic analysis of those children was performed by whole-exome sequencing (WES).

Results: Fourteen patients (32.6%, 14/43) had positive genetic diagnoses, including fifteen mutations in fourteen genes. The overall diagnostic yield was 32.6%. A total of 9 patients were diagnosed as pathogenic mutations, including 4 variants had been reported as pathogenic previously and 6 novel variants that had not been reported previously. Therefore, WES heralds promise as a tool for clinical diagnosis of patients with genetic disease.

Conclusion: Early establishment of a specific diagnosis, on the one hand, is necessary for providing an accurate prognosis and recurrence risk as well as optimizing management and treatment options. On the other hand, to unveil the genetic architecture of epilepsy, it is of vital importance to investigate the phenotypic and genetic complexity of epilepsy.

Keywords: De novo; Diagnostic yield; Epilepsy; Pathogenic; Whole-exome sequencing (WES).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 1-Alkyl-2-acetylglycerophosphocholine Esterase / genetics
  • Adolescent
  • Child
  • Child, Preschool
  • Epilepsy / diagnosis
  • Epilepsy / genetics*
  • Exome Sequencing / methods*
  • Female
  • Genetic Predisposition to Disease / genetics*
  • Humans
  • Infant
  • Infant, Newborn
  • Intracellular Signaling Peptides and Proteins / genetics
  • Male
  • Microtubule-Associated Proteins / genetics
  • Mutation*
  • NAV1.1 Voltage-Gated Sodium Channel / genetics

Substances

  • Intracellular Signaling Peptides and Proteins
  • LGI1 protein, human
  • Microtubule-Associated Proteins
  • NAV1.1 Voltage-Gated Sodium Channel
  • SCN1A protein, human
  • 1-Alkyl-2-acetylglycerophosphocholine Esterase
  • PAFAH1B1 protein, human