A developmentally regulated gene encodes the dictyostelium homolog of yeast ribosomal protein S4 and mammalian LLRep3 proteins

Nucleic Acids Res. 1991 Jul 25;19(14):3867-73. doi: 10.1093/nar/19.14.3867.

Abstract

We report the sequence and expression of a single-copy gene from Dictyostelium discoideum which encodes the homolog of yeast ribosomal protein S4, a protein located on the small ribosomal subunit and known to play an important role in maintaining translational fidelity. Over a highly conserved central region, the Dictyostelium protein has 78% sequence similarity to the yeast protein and 83% sequence similarity to mammalian S4 protein homologs, the LLRep3 proteins. The Dictyostelium gene encodes a polypeptide 28,717 Da in size and hence this ribosomal protein has been named rp29. The N-terminal sequence of the Dictyostelium rp29 protein is extended by 61 amino acids and 14 amino acids compared to the mammalian and yeast proteins, respectively, and the C-terminus is correspondingly 15 amino acids or 2 amino acids shorter. Although the coding region of the rp29 gene is present on a single exon, a 157bp intron interrupts the 5' untranslated region and unusually contains four direct repeats of the sequence TCAATCT. The gene is expressed maximally during vegetative growth but a second peak of expression also occurs late in development which is restricted to prestalk cells; rp29 is the first Dictyostelium ribosomal protein gene reported which shows prestalk-specific developmental expression. During each round of expression, only a single 0.9kb transcript is produced which is similar in size to the yeast S4 ribosomal protein transcript (0.8kb) but markedly smaller than the mammalian LLRep3 mRNA (1.7kb) due to a much shorter 5' untranslated region.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Biological Evolution
  • Codon
  • DNA, Fungal
  • Dictyostelium / genetics*
  • Dictyostelium / growth & development
  • Fungal Proteins / genetics
  • Gene Expression Regulation, Fungal
  • Humans
  • Mice
  • Molecular Sequence Data
  • Poly A / genetics
  • Protein Biosynthesis
  • Proteins / genetics*
  • RNA-Binding Proteins
  • Restriction Mapping
  • Ribosomal Proteins / genetics*
  • Sequence Homology, Nucleic Acid
  • Terminator Regions, Genetic

Substances

  • Codon
  • DNA, Fungal
  • Fungal Proteins
  • Proteins
  • RNA-Binding Proteins
  • Ribosomal Proteins
  • ribosomal protein 29
  • ribosomal protein S4
  • LLREP3 protein, Dictyostelium discoideum
  • Poly A

Associated data

  • GENBANK/X29567
  • GENBANK/X56297
  • GENBANK/X56865
  • GENBANK/X57509
  • GENBANK/X57510
  • GENBANK/X58037
  • GENBANK/X58038
  • GENBANK/X58104
  • GENBANK/X58105
  • GENBANK/X58106
  • GENBANK/X58496