Membrane insertion of α-xenorhabdolysin in near-atomic detail

Elife. 2018 Jul 16:7:e38017. doi: 10.7554/eLife.38017.

Abstract

α-Xenorhabdolysins (Xax) are α-pore-forming toxins (α-PFT) that form 1-1.3 MDa large pore complexes to perforate the host cell membrane. PFTs are used by a variety of bacterial pathogens to attack host cells. Due to the lack of structural information, the molecular mechanism of action of Xax toxins is poorly understood. Here, we report the cryo-EM structure of the XaxAB pore complex from Xenorhabdus nematophila and the crystal structures of the soluble monomers of XaxA and XaxB. The structures reveal that XaxA and XaxB are built similarly and appear as heterodimers in the 12-15 subunits containing pore, classifying XaxAB as bi-component α-PFT. Major conformational changes in XaxB, including the swinging out of an amphipathic helix are responsible for membrane insertion. XaxA acts as an activator and stabilizer for XaxB that forms the actual transmembrane pore. Based on our results, we propose a novel structural model for the mechanism of Xax intoxication.

Keywords: bi-component toxin; cryo-EM; infectious disease; microbiology; molecular biophysics; none; pore-forming toxin; structural biology; structure; xenorhabdolysin; xenorhabdus.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / metabolism
  • Bacterial Proteins / ultrastructure*
  • Bacterial Toxins / chemistry*
  • Bacterial Toxins / metabolism
  • Cell Membrane / chemistry*
  • Cell Membrane / metabolism
  • Cell Membrane / ultrastructure*
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Pore Forming Cytotoxic Proteins / chemistry*
  • Pore Forming Cytotoxic Proteins / metabolism
  • Pore Forming Cytotoxic Proteins / ultrastructure*
  • Protein Conformation
  • Protein Multimerization

Substances

  • Bacterial Proteins
  • Bacterial Toxins
  • Pore Forming Cytotoxic Proteins
  • alpha-xenorhabdolysin, Xenorhabdus nematophila