V - COG5930 - CRISPR-Cas system type I-D effector complex large subunit Cas10d/Csc3, contains HD superfamily nuclease domain
COG symbol:
Cas10d
Pathways:
CRISPR-Cas system
Basic Stats
Organisms: 25/1309
Genes: 25/3456089
Proteins: 25/3213255
Median Protein Length: 1020.84
Taxonomy Categories
Click on table rows for more informationARCHAEA
CRENARCHAEOTA [0/25 organisms 0 genes]
EURYARCHAEOTA [7/79 organisms 7 genes]
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Assembly | Genome | TaxID | No. genes |
---|---|---|---|
GCF_000008665.1 | Archaeoglobus_fulgidus_DSM_4304 | 224325 | 0 |
GCF_000025505.1 | Ferroglobus_placidus_DSM_10642 | 589924 | 0 |
GCF_000789255.1 | Geoglobus_acetivorans_SBH6 | 565033 | 0 |
GCF_000025665.1 | Aciduliprofundum_boonei_T469 | 439481 | 0 |
GCF_000196895.1 | Halalkalicoccus_jeotgali_B3 | 795797 | 0 |
GCF_001011115.1 | Halanaeroarchaeum_sulfurireducens_HSR2 | 1604004 | 0 |
GCF_000011085.1 | Haloarcula_marismortui_ATCC_43049 | 272569 | 0 |
GCF_003058365.1 | Haloarculaceae_archaeon_HArcel1 | 1679096 | 0 |
GCF_000006805.1 | Halobacterium_salinarum_NRC-1_ATCC_700922 | 64091 | 0 |
GCF_000226975.2 | Halobiforma_lacisalsi_AJ5 | 358396 | 0 |
GCF_001767315.1 | Halodesulfurarchaeum_formicicum_HTSR1 | 1873524 | 0 |
GCF_000025685.1 | Haloferax_volcanii_DS2 | 309800 | 0 |
GCF_000172995.2 | Halogeometricum_borinquense_DSM_11551_PR_3 | 469382 | 0 |
GCF_002788215.1 | Halohasta_litchfieldiae_tADL | 1073996 | 0 |
GCF_000023965.1 | Halomicrobium_mukohataei_DSM_12286 | 485914 | 0 |
GCF_002355635.1 | Halopenitus_persicus_CBA1233 | 1048396 | 0 |
GCF_000224475.1 | halophilic_archaeon_DL31 | 756883 | 0 |
GCF_000217715.1 | Halopiger_xanaduensis_SH-6 | 797210 | 0 |
GCF_003856835.1 | Haloplanus_aerogenes_JCM_16430 | 660522 | 0 |
GCF_000237865.1 | Haloquadratum_walsbyi_C23 | 768065 | 1 |
GCF_000470655.1 | Halorhabdus_tiamatea_SARL4B_type_strain_SARL4B | 1033806 | 0 |
GCF_001989615.1 | Halorientalis_IM1011 | 1932360 | 0 |
GCF_000022205.1 | Halorubrum_lacusprofundi_ATCC_49239 | 416348 | 1 |
GCF_004087835.1 | Halorussus_RC-68 | 2505977 | 1 |
GCF_000517625.1 | Halostagnicola_larsenii_XH-48 | 797299 | 0 |
GCF_000025325.1 | Haloterrigena_turkmenica_DSM_5511 | 543526 | 0 |
GCA_000328525.1 | Halovivax_ruber_XH-70 | 797302 | 0 |
GCF_000025625.1 | Natrialba_magadii_ATCC_43099 | 547559 | 0 |
GCF_000281695.1 | Natrinema_J7-2 | 406552 | 0 |
GCF_000230715.2 | Natronobacterium_gregoryi_SP2 | 797304 | 0 |
GCF_000328685.1 | Natronococcus_occultus_SP4 | 694430 | 0 |
GCF_002156705.1 | Natronolimnobius_aegyptiacus_JWNM-HA_15 | 745377 | 0 |
GCF_000026045.1 | Natronomonas_pharaonis_DSM_2160_Gabara | 348780 | 1 |
GCF_000403645.1 | Salinarchaeum_Harcht-Bsk1 | 1333523 | 0 |
GCF_002906575.1 | Salinigranum_rubrum_GX10 | 755307 | 1 |
GCA_000246735.1 | uncultured_marine_group_II_euryarchaeote | 274854 | 0 |
GCF_000191585.1 | Methanobacterium_lacus_AL-21 | 877455 | 0 |
GCF_000024185.1 | Methanobrevibacter_ruminantium_M1 | 634498 | 0 |
GCF_000012545.1 | Methanosphaera_stadtmanae_DSM_3091 | 339860 | 0 |
GCF_000008645.1 | Methanothermobacter_thermautotrophicus_Delta_H | 187420 | 0 |
GCF_000166095.1 | Methanothermus_fervidus_DSM_2088 | 523846 | 0 |
GCF_000091665.1 | Methanocaldococcus_jannaschii_DSM_2661 | 243232 | 0 |
GCF_000011585.1 | Methanococcus_maripaludis_S2 | 267377 | 0 |
GCF_000179575.2 | Methanothermococcus_okinawensis_IH1 | 647113 | 0 |
GCF_000214415.1 | Methanotorris_igneus_Kol_5 | 880724 | 0 |
GCF_000063445.1 | Methanocella_arvoryzae_MRE50 | 351160 | 0 |
GCF_000013725.1 | Methanococcoides_burtonii_DSM_6242 | 259564 | 0 |
GCF_000015765.1 | Methanocorpusculum_labreanum_Z | 410358 | 0 |
GCF_900079125.1 | Methanoculleus_bourgensis | 83986 | 0 |
GCF_000196655.1 | Methanohalobium_evestigatum_Z-7303 | 644295 | 0 |
GCF_000025865.1 | Methanohalophilus_mahii_DSM_5219 | 547558 | 0 |
GCF_000147875.1 | Methanolacinia_petrolearia_DSM_11571 | 679926 | 0 |
GCF_000235685.2 | Methanolinea_tarda_NOBI-1 | 882090 | 0 |
GCF_000306725.1 | Methanolobus_psychrophilus_R15 | 1094980 | 0 |
GCF_000328665.1 | Methanomethylovorans_hollandica_DSM_15978 | 867904 | 0 |
GCF_000327485.1 | Methanoregula_formicica_SMSP | 593750 | 0 |
GCF_000235565.1 | Methanosaeta_harundinacea_6Ac | 1110509 | 0 |
GCF_000217995.1 | Methanosalsum_zhilinae_DSM_4017 | 679901 | 0 |
GCA_000007345.1 | Methanosarcina_acetivorans_C2A | 188937 | 0 |
GCF_000007065.1 | Methanosarcina_mazei_Go1 | 192952 | 0 |
GCF_000021965.1 | Methanosphaerula_palustris_E1-9c | 521011 | 1 |
GCF_000013445.1 | Methanospirillum_hungatei_JF-1 | 323259 | 1 |
GCF_000204415.1 | Methanothrix_soehngenii_GP6 | 990316 | 0 |
GCA_000007185.1 | Methanopyrus_kandleri_AV19 | 190192 | 0 |
GCA_001761425.1 | Nanohaloarchaea_archaeon_SG9 | 1737403 | 0 |
GCF_000725425.1 | Palaeococcus_pacificus_DY20341 | 1343739 | 0 |
GCF_000195935.2 | Pyrococcus_abyssi_GE5 | 272844 | 0 |
GCF_000007305.1 | Pyrococcus_furiosus_DSM_3638 | 186497 | 0 |
GCF_000009965.1 | Thermococcus_kodakarensis_KOD1 | 69014 | 0 |
GCF_000404225.1 | Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 | 1295009 | 0 |
GCF_003711245.1 | Candidatus_Methanomethylophilus_alvus_Mx-05 | 1291540 | 0 |
GCF_000800805.1 | Candidatus_Methanoplasma_termitum_MpT1 | 1577791 | 0 |
GCF_900090055.1 | Cuniculiplasma_divulgatum_PM4_JCM_30641_VKM_B-2940 | 1673428 | 0 |
GCF_000152265.2 | Ferroplasma_acidarmanus_fer1 | 333146 | 0 |
GCF_001560915.1 | methanogenic_archaeon_ISO4-H5 | 1495144 | 0 |
GCF_000008265.1 | Picrophilus_torridus_DSM_9790 | 263820 | 0 |
GCF_000195915.1 | Thermoplasma_acidophilum_DSM_1728 | 273075 | 0 |
GCF_000011185.1 | Thermoplasma_volcanium_GSS1 | 273116 | 0 |
GCF_000350305.1 | Thermoplasmatales_archaeon_BRNA1 | 1054217 | 0 |
THAUMARCHAEOTA [0/12 organisms 0 genes]
OTHER ARCHAEA [1/6 organisms 1 genes]
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Assembly | Genome | TaxID | No. genes |
---|---|---|---|
GCF_000019605.1 | Candidatus_Korarchaeum_cryptofilum_OPF8 | 374847 | 0 |
GCF_002214165.1 | Candidatus_Mancarchaeum_acidiphilum_Mia14 | 1920749 | 0 |
GCA_001552015.1 | Candidatus_Nanopusillus_acidilobi | 1577684 | 0 |
GCA_000008085.1 | Nanoarchaeum_equitans_Kin4-M | 228908 | 0 |
GCF_002952775.1 | archaeon_AArc-Sl | 2055893 | 1 |
GCA_000830295.1 | archaeon_GW2011_AR15 | 1579373 | 0 |
BACTERIA
ACIDOBACTERIA [0/7 organisms 0 genes]
ACTINOBACTERIA [0/155 organisms 0 genes]
AQUIFICAE [0/9 organisms 0 genes]
BACTEROIDETES [0/107 organisms 0 genes]
CHLAMYDIAE [0/6 organisms 0 genes]
CHLOROBI [0/5 organisms 0 genes]
CHLOROFLEXI [1/14 organisms 1 genes]
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Assembly | Genome | TaxID | No. genes |
---|---|---|---|
GCF_000199675.1 | Anaerolinea_thermophila_UNI-1 | 926569 | 0 |
GCF_001717545.1 | Anaerolineaceae_bacterium_oral_taxon_439_W11661 | 1889813 | 0 |
GCF_900184705.1 | Brevefilum_fermentans | 1986204 | 0 |
GCF_003966975.1 | Pelolinea_submarina_MO-CFX1 | 913107 | 0 |
GCF_900066015.1 | Candidatus_Promineofilum_breve_Cfx-K | 1806508 | 0 |
GCF_000281175.1 | Caldilinea_aerophila_DSM_14535_NBRC_104270 | 926550 | 0 |
GCF_000021945.1 | Chloroflexus_aggregans_DSM_9485 | 326427 | 0 |
GCA_000018565.1 | Herpetosiphon_aurantiacus_DSM_785 | 316274 | 0 |
GCF_000016665.1 | Roseiflexus_RS-1 | 357808 | 0 |
GCF_000011905.1 | Dehalococcoides_mccartyi_195 | 243164 | 0 |
GCF_000143165.1 | Dehalogenimonas_lykanthroporepellens_BL-DC-9 | 552811 | 0 |
GCF_004208415.1 | Ktedonobacterales_bacterium_SCAWS-G2 | 2509675 | 1 |
GCF_000024985.1 | Sphaerobacter_thermophilus_DSM_20745 | 479434 | 0 |
GCF_000021685.1 | Thermomicrobium_roseum_DSM_5159 | 309801 | 0 |
CYANOBACTERIA [15/41 organisms 15 genes]
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Assembly | Genome | TaxID | No. genes |
---|---|---|---|
GCA_001765415.1 | Candidatus_Melainabacteria_bacterium_MEL.A1 | 1899017 | 0 |
GCF_000018105.1 | Acaryochloris_marina_MBIC11017 | 329726 | 0 |
GCF_000317695.1 | Anabaena_cylindrica_PCC_7122 | 272123 | 1 |
GCF_000316575.1 | Calothrix_PCC_7507 | 99598 | 1 |
GCF_000317125.1 | Chroococcidiopsis_thermalis_PCC_7203 | 251229 | 0 |
GCF_000316515.1 | Cyanobium_gracile_PCC_6307 | 292564 | 0 |
GCA_000317535.1 | Cylindrospermum_stagnale_PCC_7417 | 56107 | 1 |
GCF_000317615.1 | Dactylococcopsis_salina_PCC_8305 | 13035 | 1 |
GCF_001548455.1 | Fischerella_NIES-3754 | 1752063 | 1 |
GCF_002075285.2 | Halomicronema_hongdechloris_C2206 | 1641165 | 1 |
GCF_000316605.1 | Leptolyngbya_PCC_7376 | 111781 | 0 |
GCF_003054475.1 | Nodularia_spumigena_UHCC_0039 | 1914872 | 0 |
GCF_000020025.1 | Nostoc_punctiforme_PCC_73102_ATCC_29133 | 63737 | 0 |
GCF_000009705.1 | Nostoc_PCC_7120 | 103690 | 0 |
GCA_003609755.1 | Planktothrix_agardhii_NIES-204 | 282423 | 1 |
GCF_000317025.1 | Pleurocapsa_PCC_7327 | 118163 | 0 |
GCF_000011485.1 | Prochlorococcus_marinus_MIT_9313_MIT9313 | 74547 | 0 |
GCF_000007925.1 | Prochlorococcus_marinus_sub_marinus_CCMP1375_SS120 | 167539 | 0 |
GCF_000317065.1 | Pseudanabaena_PCC_7367 | 82654 | 0 |
GCF_000316665.1 | Rivularia_PCC_7116 | 373994 | 1 |
GCF_000317575.1 | Stanieria_cyanosphaera_PCC_7437 | 111780 | 1 |
GCF_000012525.1 | Synechococcus_elongatus_PCC_7942 | 1140 | 0 |
GCF_000009725.1 | Synechocystis_PCC_6803 | 1148 | 1 |
GCF_000011345.1 | Thermosynechococcus_elongatus_BP-1 | 197221 | 0 |
GCF_000204075.1 | Trichormus_variabilis_ATCC_29413 | 240292 | 1 |
GCF_000011385.1 | Gloeobacter_violaceus_PCC_7421 | 251221 | 0 |
GCF_003060805.1 | Arthrospira_TJSD092 | 2153484 | 0 |
GCF_000025125.1 | Candidatus_Atelocyanobacterium_thalassa_isolate_ALOHA | 1453429 | 0 |
GCA_000317145.1 | Chamaesiphon_minutus_PCC_6605 | 1173020 | 0 |
GCF_002368355.1 | Chondrocystis_NIES-4102 | 2005460 | 0 |
GCF_000317495.1 | Crinalium_epipsammum_PCC_9333 | 1173022 | 1 |
GCF_000317675.1 | Cyanobacterium_aponinum_PCC_10605 | 755178 | 0 |
GCF_000147335.1 | Cyanothece_PCC_7822 | 497965 | 1 |
GCF_000317045.1 | Geitlerinema_PCC_7407 | 1173025 | 0 |
GCF_000317555.1 | Gloeocapsa_PCC_7428 | 1173026 | 1 |
GCF_000317635.1 | Halothece_PCC_7418 | 65093 | 1 |
GCF_000317515.1 | Microcoleus_PCC_7113 | 1173027 | 0 |
GCF_000010625.1 | Microcystis_aeruginosa_NIES-843 | 449447 | 0 |
GCF_001767235.1 | Moorea_producens_PAL-8-15-08-1 | 1458985 | 0 |
GCF_000317475.1 | Oscillatoria_nigro-viridis_PCC_7112 | 179408 | 0 |
GCF_000014265.1 | Trichodesmium_erythraeum_IMS101 | 203124 | 0 |
DEFERRIBACTERES [0/5 organisms 0 genes]
DEINOCOCCUS-THERMUS [0/6 organisms 0 genes]
FIRMICUTES
BACILLI [1/73 organisms 1 genes]
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Assembly | Genome | TaxID | No. genes |
---|---|---|---|
GCF_002243625.1 | Aeribacillus_pallidus_KCTC3564 | 33936 | 0 |
GCF_003546865.1 | Aerococcaceae_bacterium_ZY16052 | 2036206 | 0 |
GCF_000193205.1 | Aerococcus_urinae_ACS-120-V-Col10a | 866775 | 0 |
GCF_000219875.1 | Alicyclobacillus_acidocaldarius_sub_acidocaldarius_Tc-4-1 | 1048834 | 0 |
GCF_000307165.1 | Amphibacillus_xylanus_NBRC_15112 | 698758 | 0 |
GCF_002355375.1 | Aneurinibacillus_soli_CB4 | 1500254 | 0 |
GCF_000019045.1 | Anoxybacillus_flavithermus_WK1 | 491915 | 0 |
GCF_001989575.1 | Auricoccus_indicus_S31 | 1849491 | 0 |
GCF_000007845.1 | Bacillus_anthracis_Ames | 198094 | 0 |
GCF_000007825.1 | Bacillus_cereus_ATCC_14579 | 226900 | 0 |
GCF_000011145.1 | Bacillus_halodurans_C-125 | 272558 | 0 |
GCF_000008425.1 | Bacillus_licheniformis_DSM_13_ATCC_14580 | 279010 | 0 |
GCF_000009045.1 | Bacillus_subtilis_sub_subtilis_168 | 224308 | 0 |
GCF_000338755.1 | Bacillus_thuringiensis_serovar_kurstaki_HD73 | 1279365 | 0 |
GCF_000010165.1 | Brevibacillus_brevis_NBRC_100599_NBRC_100599_47 | 358681 | 0 |
GCF_002381265.1 | Brochothrix_thermosphacta_BI | 2756 | 0 |
GCF_000317975.2 | Carnobacterium_maltaromaticum_LMA28 | 1234679 | 0 |
GCF_003713065.1 | Cohnella_18JY8-7 | 2480923 | 0 |
GCF_000007785.1 | Enterococcus_faecalis_V583 | 226185 | 0 |
GCF_000496635.1 | Exiguobacterium_MH3 | 1399115 | 0 |
GCF_001629705.1 | Fictibacillus_phosphorivorans_G25-29 | 1221500 | 0 |
GCF_900638055.1 | Gemella_haemolysans_NCTC10459 | 1379 | 0 |
GCF_000009785.1 | Geobacillus_kaustophilus_HTA426 | 235909 | 0 |
GCF_000284515.1 | Halobacillus_halophilus_DSM_2266_type_strain_DSM_2266 | 866895 | 0 |
GCF_002005405.1 | Jeotgalibaca_dankookensis_EX-07 | 708126 | 0 |
GCF_000818095.1 | Jeotgalibacillus_malaysiensis_D5 | 1508404 | 0 |
GCF_900637935.1 | Kurthia_zopfii_NCTC404 | 1650 | 0 |
GCF_000092905.1 | Kyrpidia_tusciae_DSM_2912 | 562970 | 0 |
GCF_002893785.1 | Laceyella_sacchari_FBKL4.010 | 37482 | 1 |
GCF_000011985.1 | Lactobacillus_acidophilus_NCFM | 272621 | 0 |
GCF_000338115.2 | Lactobacillus_plantarum_ZJ316 | 1284663 | 0 |
GCF_000016825.1 | Lactobacillus_reuteri_DSM_20016 | 557436 | 0 |
GCF_000011045.1 | Lactobacillus_rhamnosus_GG_ATCC_53103 | 568703 | 0 |
GCF_000006865.1 | Lactococcus_lactis_sub_lactis_Il1403_IL1403 | 1358 | 0 |
GCF_001307805.1 | Lentibacillus_amyloliquefaciens_LAM0015 | 1472767 | 0 |
GCF_000092505.1 | Leuconostoc_kimchii_IMSNU_11154 | 762051 | 0 |
GCF_000195795.1 | Listeria_innocua_Clip11262 | 272626 | 0 |
GCF_000196035.1 | Listeria_monocytogenes_EGD-e | 169963 | 0 |
GCF_002982115.1 | Lysinibacillus_sphaericus_DSM_28 | 1421 | 0 |
GCF_000010585.1 | Macrococcus_caseolyticus_JCSC5402 | 458233 | 0 |
GCF_001895285.1 | Marinilactibacillus_15R | 1911586 | 0 |
GCF_000747585.1 | Melissococcus_plutonius_S1 | 1385937 | 0 |
GCF_002005165.1 | Novibacillus_thermophilus_SG-1 | 1471761 | 0 |
GCF_000011245.1 | Oceanobacillus_iheyensis_HTE831 | 221109 | 0 |
GCF_000014385.1 | Oenococcus_oeni_PSU-1 | 203123 | 0 |
GCF_000164985.3 | Paenibacillus_polymyxa_SC2 | 886882 | 0 |
GCF_003595195.1 | Paenisporosarcina_K2R23-3 | 2320858 | 0 |
GCF_001700985.1 | Parageobacillus_thermoglucosidasius_NCIMB_11955 | 1426 | 0 |
GCF_003268595.1 | Paraliobacillus_X-1125 | 2213194 | 0 |
GCF_000237995.1 | Pediococcus_claussenii_ATCC_BAA-344 | 701521 | 0 |
GCF_001687565.2 | Planococcus_antarcticus_DSM_14505 | 1185653 | 0 |
GCF_001617605.1 | Rummeliibacillus_stabekisii_PP9 | 241244 | 0 |
GCF_001685435.2 | Salimicrobium_jeotgali_MJ3 | 1230341 | 0 |
GCF_001005905.1 | Salinicoccus_halodurans_H3B36 | 407035 | 0 |
GCF_000271325.1 | Solibacillus_silvestris_StLB046 | 1002809 | 0 |
GCF_004014985.1 | Sporolactobacillus_terrae_DRG1 | 269673 | 0 |
GCF_001590685.1 | Sporosarcina_psychrophila_DSM_6497 | 1476 | 0 |
GCF_000009645.1 | Staphylococcus_aureus_sub_aureus_N315 | 158879 | 0 |
GCF_000007645.1 | Staphylococcus_epidermidis_ATCC_12228 | 176280 | 0 |
GCF_000009865.1 | Staphylococcus_haemolyticus_JCSC1435 | 279808 | 0 |
GCF_000007265.1 | Streptococcus_agalactiae_2603VR | 208435 | 0 |
GCF_000271865.1 | Streptococcus_mutans_GS-5 | 1198676 | 0 |
GCF_000006885.1 | Streptococcus_pneumoniae_TIGR4_ATCC_BAA-334 | 170187 | 0 |
GCF_000006785.2 | Streptococcus_pyogenes_M1_GAS_SF370 | 160490 | 0 |
GCF_000253395.1 | Streptococcus_thermophilus_JIM_8232 | 1051074 | 0 |
GCF_000725365.1 | Terribacillus_goriensis_MP602 | 386490 | 0 |
GCF_000283615.1 | Tetragenococcus_halophilus_NBRC_12172 | 945021 | 0 |
GCF_000227705.2 | Thermobacillus_composti_KWC4 | 717605 | 0 |
GCF_002162355.1 | Tumebacillus_avium_AR23208 | 1903704 | 0 |
GCF_002370195.2 | Ureibacillus_thermosphaericus_A1 | 51173 | 0 |
GCF_001998885.1 | Vagococcus_penaei_CD276 | 633807 | 0 |
GCF_003667805.1 | Virgibacillus_halodenitrificans_Bac324 | 1482 | 0 |
GCF_000219805.1 | Weissella_koreensis_KACC_15510 | 1045854 | 0 |