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    LOC100049030 eukaryotic translation initiation factor NCBP-like [ Triticum aestivum (bread wheat) ]

    Gene ID: 100049030, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC100049030
    Gene description
    eukaryotic translation initiation factor NCBP-like
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Triticum aestivum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
    Also known as
    NCBP
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    Genomic context

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    See LOC100049030 in Genome Data Viewer
    Location:
    chromosome: 4D
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current IWGSC CS RefSeq v2.1 (GCF_018294505.1) 4D NC_057805.1 (371104088..371107835)

    Chromosome 4D - NC_057805.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene uncharacterized LOC123097985 Neighboring gene uncharacterized LOC123097986 Neighboring gene uncharacterized LOC123096973

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_057805.1 Chromosome 4D Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression and purification of recombinant wheat translation initiation factors eIF1, eIF1A, eIF4A, eIF4B, eIF4F, eIF(iso)4F, and eIF5. Mayberry LK, et al. Methods Enzymol, 2007. PMID 17913646
    2. Assessment of adaptive evolution between wheat and rice as deduced from full-length common wheat cDNA sequence data and expression patterns. Kawaura K, et al. BMC Genomics, 2009 Jun 18. PMID 19534823, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA 7-methylguanosine cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of eukaryotic translation initiation factor 4F complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor NCBP
    Names
    Eukaryotic translation initiation factor NCBP
    Novel cap-binding protein
    mRNA cap-binding protein
    translation initiation factor nCBP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001405089.1 → NP_001392018.1  eukaryotic translation initiation factor NCBP

      Status: VALIDATED

      Source sequence(s)
      GAJL01240856, GILY01019333
      UniProtKB/Swiss-Prot
      A3RCV9
      UniProtKB/TrEMBL
      A0A9R1GWN7

    RefSeqs of Annotated Genomes: Triticum aestivum Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IWGSC CS RefSeq v2.1 Primary Assembly

    Genomic

    1. NC_057805.1 Reference IWGSC CS RefSeq v2.1 Primary Assembly

      Range
      371104088..371107835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044519852.1 → XP_044375787.1  eukaryotic translation initiation factor NCBP

      Conserved Domains (1) summary
      pfam01652
      Location:55 → 212
      IF4E; Eukaryotic initiation factor 4E
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3RCV9.1 GenPept UniProtKB/Swiss-Prot:A3RCV9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases