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    usf1 upstream transcription factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100124791, updated on 17-Aug-2024

    Summary

    Official Symbol
    usf1provided by Xenbase
    Official Full Name
    upstream transcription factor 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5918718
    See related
    Ensembl:ENSXETG00000043784
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    uef; fchl; mltf; fchl1; mltfi; bhlhb11; hyplip1
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
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    Genomic context

    See usf1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (146837503..146844073, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116406672 Neighboring gene F11 receptor Neighboring gene thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 Neighboring gene uncharacterized LOC116406919 Neighboring gene Rho GTPase activating protein 30 Neighboring gene nectin cell adhesion molecule 4

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030684.2 Chromosome 8 Reference UCB_Xtro_10.0 Primary Assembly

    General protein information

    Preferred Names
    upstream stimulatory factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102766.1NP_001096236.1  upstream stimulatory factor 1

      See identical proteins and their annotated locations for NP_001096236.1

      Status: PROVISIONAL

      Source sequence(s)
      BC135362
      UniProtKB/TrEMBL
      A4IH39
      Related
      ENSXETP00000112922.1, ENSXETT00000121451.1
      Conserved Domains (1) summary
      pfam00010
      Location:199254
      HLH; Helix-loop-helix DNA-binding domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      146837503..146844073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)