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    LINC03048 long intergenic non-protein coding RNA 3048 [ Homo sapiens (human) ]

    Gene ID: 100130370, updated on 28-Oct-2024

    Summary

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    Official Symbol
    LINC03048provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3048provided by HGNC
    Primary source
    HGNC:HGNC:56272
    See related
    Ensembl:ENSG00000262223 AllianceGenome:HGNC:56272
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in endometrium (RPKM 3.9), brain (RPKM 3.6) and 24 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LINC03048 in Genome Data Viewer
    Location:
    17q25.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (81375438..81385382, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (82290602..82300547, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (79349238..79359182, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79313044-79313992 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:79319562-79319850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79322101-79322738 Neighboring gene regulator of early neurogenesis 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79339241-79339828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79339829-79340414 Neighboring gene uncharacterized LOC124904083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79352685-79353284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79353285-79353884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79359790-79360358 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79361743-79362302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79362303-79362862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79362863-79363420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79364001-79364559 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79367354-79367911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:79369995-79370603 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:79370604-79371212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79376071-79376596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79379388-79379942 Neighboring gene BAH domain and coiled-coil containing 1 Neighboring gene Sharpr-MPRA regulatory region 9433 Neighboring gene microRNA 4740 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:79386221-79386468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79386861-79387562 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:79390656-79391605 Neighboring gene microRNA 3186

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Clone Names

    • DKFZp761P0212

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_164137.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC110285
      Related
      ENST00000572077.6

    2. NR_164138.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC110285

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      81375438..81385382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_025791805.1 Reference GRCh38.p14 PATCHES

      Range
      30076..40020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      82290602..82300547 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials