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    LOC100194385 putative xylose isomerase family protein [ Zea mays ]

    Gene ID: 100194385, updated on 27-Apr-2024

    Summary

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    Gene symbol
    LOC100194385
    Gene description
    putative xylose isomerase family protein
    Locus tag
    ZEAMMB73_Zm00001d007113
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G005493
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    Genomic context

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    See LOC100194385 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (222449496..222453832, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (222491161..222495497, complement)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene zealexin A1 synthase-like Neighboring gene proline-rich protein 7-like Neighboring gene nucleobase-ascorbate transporter 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Endosperm-preferred expression of maize genes as revealed by transcriptome-wide analysis of expressed sequence tags. Verza NC, et al. Plant Mol Biol, 2005 Sep. PMID 16247562
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    4. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    5. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables xylose isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative xylose isomerase family protein
    Names
    Xylose isomerase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001139417.2 → NP_001132889.1  putative xylose isomerase family protein precursor

      See identical proteins and their annotated locations for NP_001132889.1

      Status: VALIDATED

      Source sequence(s)
      CABHLF010000001
      UniProtKB/TrEMBL
      B4FIH9, B6TYF9
      Conserved Domains (1) summary
      PLN02923
      Location:28 → 482
      PLN02923; xylose isomerase

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      222449496..222453832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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