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    dhys Deoxyhypusine synthase [ Salmo salar (Atlantic salmon) ]

    Gene ID: 100196722, updated on 12-May-2024

    Summary

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    Gene symbol
    dhys
    Gene description
    Deoxyhypusine synthase
    See related
    Ensembl:ENSSSAG00000087202
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See dhys in Genome Data Viewer
    Location:
    chromosome: ssa03
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (81473833..81486637)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (12838831..12851423)

    Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene transportin-2 Neighboring gene small nucleolar RNA SNORD41 Neighboring gene F-box and WD repeat domain containing 9 Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12-like Neighboring gene uncharacterized LOC106606523 Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deoxyhypusine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine modification to peptidyl-hypusine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Deoxyhypusine synthase; deoxyhypusine synthase
    NP_001135216.1
    XP_014058258.1
    XP_014058259.1
    XP_014058260.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001141744.1 → NP_001135216.1  Deoxyhypusine synthase

      See identical proteins and their annotated locations for NP_001135216.1

      Status: PROVISIONAL

      Source sequence(s)
      BT045121
      UniProtKB/TrEMBL
      A0A1S3QK05, B5X252
      Related
      ENSSSAP00000041868.1, ENSSSAT00000068328.2
      Conserved Domains (1) summary
      pfam01916
      Location:42 → 338
      DS; Deoxyhypusine synthase

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059444.1 Reference Ssal_v3.1

      Range
      81473833..81486637
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014202785.2 → XP_014058260.1  deoxyhypusine synthase isoform X1

      UniProtKB/TrEMBL
      A0A1S3QK05, A0A1S3S240
      Conserved Domains (1) summary
      pfam01916
      Location:42 → 343
      DS; Deoxyhypusine synthase

    2. XM_014202783.2 → XP_014058258.1  deoxyhypusine synthase isoform X1

      UniProtKB/TrEMBL
      A0A1S3QK05, A0A1S3S240
      Related
      ENSSSAP00000067365.2, ENSSSAT00000098964.2
      Conserved Domains (1) summary
      pfam01916
      Location:42 → 343
      DS; Deoxyhypusine synthase

    3. XM_014202784.2 → XP_014058259.1  deoxyhypusine synthase isoform X1

      UniProtKB/TrEMBL
      A0A1S3QK05, A0A1S3S240
      Conserved Domains (1) summary
      pfam01916
      Location:42 → 343
      DS; Deoxyhypusine synthase
    Nucleotide Protein
    Heading Accession and Version

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