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    marchf7 membrane associated ring-CH-type finger 7 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100379956, updated on 4-Nov-2024

    Summary

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    Official Symbol
    marchf7provided by Xenbase
    Official Full Name
    membrane associated ring-CH-type finger 7provided by Xenbase
    Primary source
    Xenbase:XB-GENE-962645
    See related
    Ensembl:ENSXETG00000007583 AllianceGenome:Xenbase:XB-GENE-962645
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    axot; march7; rnf177; march-vii; axotrophin
    Summary
    Predicted to enable zinc ion binding activity. Orthologous to human MARCHF7 (membrane associated ring-CH-type finger 7). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See marchf7 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (73091685..73123011, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (68033692..68064764, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene lymphocyte antigen 75 Neighboring gene CD302 molecule Neighboring gene bromodomain adjacent to zinc finger domain 2B Neighboring gene WD repeat, sterile alpha motif and U-box domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase MARCH7
    Names
    membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      73091685..73123011 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002933281.5 → XP_002933327.2  E3 ubiquitin-protein ligase MARCH7 isoform X1

      See identical proteins and their annotated locations for XP_002933327.2

      UniProtKB/TrEMBL
      L7N491
      Related
      ENSXETP00000016507.4, ENSXETT00000016507.5
      Conserved Domains (1) summary
      cd16812
      Location:582 → 646
      RING_CH-C4HC3_MARCH7; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH7 (MARCH7)

    2. XM_004917696.4 → XP_004917753.1  E3 ubiquitin-protein ligase MARCH7 isoform X1

      See identical proteins and their annotated locations for XP_004917753.1

      UniProtKB/TrEMBL
      L7N491
      Conserved Domains (1) summary
      cd16812
      Location:582 → 646
      RING_CH-C4HC3_MARCH7; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH7 (MARCH7)

    3. XM_031893703.1 → XP_031749563.1  E3 ubiquitin-protein ligase MARCH7 isoform X2

      UniProtKB/TrEMBL
      A0A8J1IVE0
      Conserved Domains (1) summary
      cd16812
      Location:403 → 467
      RING_CH-C4HC3_MARCH7; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING-CH7 (MARCH7)
    Nucleotide Protein Strain
    Heading Accession and Version

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