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    RPS14 ribosomal protein S14 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100470937, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RPS14
    Gene description
    ribosomal protein S14
    Locus tag
    PANDA_006589
    See related
    Ensembl:ENSAMEG00000004654
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See RPS14 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 3 NC_048220.1 (105833873..105837268)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217530.1 (382216..385614)

    Chromosome 3 - NC_048220.1Genomic Context describing neighboring genes Neighboring gene synaptopodin Neighboring gene N-deacetylase and N-sulfotransferase 1 Neighboring gene CD74 molecule Neighboring gene treacle ribosome biogenesis factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Giant panda ribosomal protein S14: cDNA, genomic sequence cloning, sequence analysis, and overexpression. Wu GF, et al. Genet Mol Res, 2010 Oct 13. PMID 20957604
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 5'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS11
    Names
    40S ribosomal protein S14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304903.1 → NP_001291832.1  small ribosomal subunit protein uS11

      See identical proteins and their annotated locations for NP_001291832.1

      Status: PROVISIONAL

      Source sequence(s)
      HM153519
      UniProtKB/TrEMBL
      D2H8L8, D9ZLV2, G1LDB6
      Related
      ENSAMEP00000004898.2, ENSAMET00000005095.2
      Conserved Domains (1) summary
      PTZ00129
      Location:1 → 140
      PTZ00129; 40S ribosomal protein S14; Provisional

    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048220.1 Reference ASM200744v2 Primary Assembly

      Range
      105833873..105837268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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