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    chd7 chromodomain helicase DNA binding protein 7 [ Anolis carolinensis (green anole) ]

    Gene ID: 100564383, updated on 10-Oct-2024

    Summary

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    Gene symbol
    chd7
    Gene description
    chromodomain helicase DNA binding protein 7
    See related
    Ensembl:ENSACAG00000005760
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See chd7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 4 NC_085844.1 (44533245..44681592, complement)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) 4 NC_014779.1 (28519464..28667845)

    Chromosome 4 - NC_085844.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134298868 Neighboring gene uncharacterized LOC134298867 Neighboring gene aspartate beta-hydroxylase Neighboring gene clavesin 1 Neighboring gene 5S ribosomal RNA Neighboring gene RAB2A, member RAS oncogene family Neighboring gene carbonic anhydrase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085844.1 Reference rAnoCar3.1.pri

      Range
      44533245..44681592 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_062980342.1 → XP_062836412.1  chromodomain-helicase-DNA-binding protein 7 isoform X4

    2. XM_062980341.1 → XP_062836411.1  chromodomain-helicase-DNA-binding protein 7 isoform X2

    3. XM_062980343.1 → XP_062836413.1  chromodomain-helicase-DNA-binding protein 7 isoform X5

    4. XM_008108500.3 → XP_008106707.1  chromodomain-helicase-DNA-binding protein 7 isoform X3

      UniProtKB/TrEMBL
      G1KEW0
      Conserved Domains (8) summary
      smart00592
      Location:2643 → 2687
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:794 → 855
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:980 → 1129
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam09606
      Location:84 → 520
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:964 → 1251
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1283 → 1397
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:876 → 928
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2565 → 2605
      BRK; BRK domain

    5. XM_008108495.3 → XP_008106702.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      See identical proteins and their annotated locations for XP_008106702.1

      UniProtKB/TrEMBL
      G1KEW0
      Conserved Domains (8) summary
      smart00592
      Location:2644 → 2688
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:794 → 855
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:980 → 1129
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam09606
      Location:84 → 520
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:964 → 1251
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1283 → 1397
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:876 → 928
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2566 → 2606
      BRK; BRK domain

    6. XM_008108498.3 → XP_008106705.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      See identical proteins and their annotated locations for XP_008106705.1

      UniProtKB/TrEMBL
      G1KEW0
      Conserved Domains (8) summary
      smart00592
      Location:2644 → 2688
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:794 → 855
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:980 → 1129
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam09606
      Location:84 → 520
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:964 → 1251
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1283 → 1397
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:876 → 928
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2566 → 2606
      BRK; BRK domain

    7. XM_008108497.3 → XP_008106704.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      See identical proteins and their annotated locations for XP_008106704.1

      UniProtKB/TrEMBL
      G1KEW0
      Conserved Domains (8) summary
      smart00592
      Location:2644 → 2688
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:794 → 855
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:980 → 1129
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam09606
      Location:84 → 520
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:964 → 1251
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1283 → 1397
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:876 → 928
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2566 → 2606
      BRK; BRK domain

    8. XM_008108496.3 → XP_008106703.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      See identical proteins and their annotated locations for XP_008106703.1

      UniProtKB/TrEMBL
      G1KEW0
      Conserved Domains (8) summary
      smart00592
      Location:2644 → 2688
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:794 → 855
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:980 → 1129
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam09606
      Location:84 → 520
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:964 → 1251
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1283 → 1397
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:876 → 928
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2566 → 2606
      BRK; BRK domain
    Nucleotide Protein
    Heading Accession and Version

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