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    LOC100711159 protein FAM3C [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100711159, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC100711159
    Gene description
    protein FAM3C
    See related
    Ensembl:ENSONIG00000018207
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
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    Genomic context

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    See LOC100711159 in Genome Data Viewer
    Location:
    chromosome: LG7
    Exon count:
    12
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG7 NC_031972.2 (14104..21432, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG7 NC_031972.1 (15008888..15016207, complement)

    Linkage Group LG7 - NC_031972.2Genomic Context describing neighboring genes Neighboring gene L-fucose kinase Neighboring gene actin related protein 6 Neighboring gene uncharacterized LOC100690076 Neighboring gene potassium inwardly rectifying channel subfamily J member 11, like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM3C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031972.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      14104..21432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025908861.1 → XP_025764646.1  protein FAM3C isoform X1

      UniProtKB/TrEMBL
      I3KP87
      Conserved Domains (1) summary
      cd13940
      Location:80 → 250
      ILEI_FAM3C; Interleukin-like EMT inducer

    2. XM_005470248.4 → XP_005470305.1  protein FAM3C isoform X3

      See identical proteins and their annotated locations for XP_005470305.1

      UniProtKB/TrEMBL
      I3KP87
      Conserved Domains (1) summary
      cd13940
      Location:59 → 229
      ILEI_FAM3C; Interleukin-like EMT inducer

    3. XM_003458280.5 → XP_003458328.1  protein FAM3C isoform X2

      UniProtKB/TrEMBL
      I3KP87
      Conserved Domains (1) summary
      cd13940
      Location:70 → 240
      ILEI_FAM3C; Interleukin-like EMT inducer

    4. XM_005470247.4 → XP_005470304.1  protein FAM3C isoform X3

      See identical proteins and their annotated locations for XP_005470304.1

      UniProtKB/TrEMBL
      I3KP87
      Related
      ENSONIP00000022932.2, ENSONIT00000022952.2
      Conserved Domains (1) summary
      cd13940
      Location:59 → 229
      ILEI_FAM3C; Interleukin-like EMT inducer
    Nucleotide Protein
    Heading Accession and Version

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