U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Tinf2 TERF1 interacting nuclear factor 2 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100770148, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Tinf2
    Gene description
    TERF1 interacting nuclear factor 2
    Locus tag
    I79_008536
    See related
    Ensembl:ENSCGRG00015017586
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tinf2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613875.1 (1038662..1044191)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (210883506..210889035, complement)

    NW_003613875.1Genomic Context describing neighboring genes Neighboring gene Rab geranylgeranyltransferase subunit alpha Neighboring gene transglutaminase 1 Neighboring gene guanosine monophosphate reductase 2 Neighboring gene NEDD8 ubiquitin like modifier Neighboring gene magnesium-dependent phosphatase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of telomere maintenance via telomere lengthening IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in telomere capping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of shelterin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TERF1-interacting nuclear factor 2
    Names
    TERF1 (TRF1)-interacting nuclear factor 2
    TERF1-interacting nuclear factor 2-like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613875.1 Reference CriGri_1.0 Primary Assembly

      Range
      1038662..1044191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003502089.5 → XP_003502137.1  TERF1-interacting nuclear factor 2 isoform X1

      See identical proteins and their annotated locations for XP_003502137.1

      UniProtKB/TrEMBL
      A0A8C2MF71, A0A9J7F3F7
      Conserved Domains (2) summary
      cd11741
      Location:244 → 347
      TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
      pfam14973
      Location:20 → 162
      TINF2_N; TERF1-interacting nuclear factor 2 N-terminus

    2. XM_007642670.4 → XP_007640860.1  TERF1-interacting nuclear factor 2 isoform X2

      See identical proteins and their annotated locations for XP_007640860.1

      UniProtKB/TrEMBL
      A0A9J7J9J4, G3HDD2
      Conserved Domains (2) summary
      cd11741
      Location:244 → 347
      TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
      pfam14973
      Location:20 → 162
      TINF2_N; TERF1-interacting nuclear factor 2 N-terminus

    3. XM_007642671.3 → XP_007640861.1  TERF1-interacting nuclear factor 2 isoform X3

      See identical proteins and their annotated locations for XP_007640861.1

      UniProtKB/TrEMBL
      A0A9J7F2V5, G3HDD2
      Conserved Domains (2) summary
      cd11741
      Location:244 → 347
      TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
      pfam14973
      Location:20 → 162
      TINF2_N; TERF1-interacting nuclear factor 2 N-terminus

    4. XM_007642673.4 → XP_007640863.1  TERF1-interacting nuclear factor 2 isoform X4

      See identical proteins and their annotated locations for XP_007640863.1

      UniProtKB/TrEMBL
      A0A9J7F2R9, G3HDD2
      Conserved Domains (2) summary
      cd11741
      Location:244 → 347
      TIN2_TBM; TRF-binding motif region of TRF-Interacting Nuclear factor 2
      pfam14973
      Location:20 → 162
      TINF2_N; TERF1-interacting nuclear factor 2 N-terminus

    RNA

    1. XR_004773249.1 RNA Sequence

    2. XR_482297.4 RNA Sequence

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NW_023276807.1 Alternate CriGri-PICRH-1.0

      Range
      210883506..210889035 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027390543.2 → XP_027246344.1  TERF1-interacting nuclear factor 2 isoform X3

      UniProtKB/TrEMBL
      A0A9J7F2V5, G3HDD2
      Related
      ENSCGRP00015056107.1, ENSCGRT00015070545.1

    2. XM_027390541.2 → XP_027246342.1  TERF1-interacting nuclear factor 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C2MF71, A0A9J7F3F7

    3. XM_027390542.2 → XP_027246343.1  TERF1-interacting nuclear factor 2 isoform X2

      UniProtKB/TrEMBL
      A0A9J7J9J4, G3HDD2

    4. XM_027390544.2 → XP_027246345.1  TERF1-interacting nuclear factor 2 isoform X4

      UniProtKB/TrEMBL
      A0A9J7F2R9, G3HDD2

    RNA

    1. XR_004772530.1 RNA Sequence

      Related
      ENSCGRT00015028423.2

    2. XR_003480165.2 RNA Sequence

      Related
      ENSCGRT00015028358.2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.