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    Atp7b ATPase copper transporting beta [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100770719, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Atp7b
    Gene description
    ATPase copper transporting beta
    Locus tag
    I79_010076
    See related
    Ensembl:ENSCGRG00015022066
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Atp7b in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613958.1 (40944..117263, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (61588781..61666159)

    NW_003613958.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 70 Neighboring gene ALG11 alpha-1,2-mannosyltransferase Neighboring gene NIMA related kinase 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type divalent copper transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in copper ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in monoatomic cation transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper-transporting ATPase 2
    Names
    ATPase, Cu++ transporting, beta polypeptide
    Copper-transporting ATPase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613958.1 Reference CriGri_1.0 Primary Assembly

      Range
      40944..117263 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035456442.1 → XP_035312333.1  copper-transporting ATPase 2 isoform X4

      UniProtKB/TrEMBL
      A0A8C2MNK6
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:581 → 1222
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    2. XM_035456441.1 → XP_035312332.1  copper-transporting ATPase 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C2MNK6
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:579 → 1276
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    3. XM_035456440.1 → XP_035312331.1  copper-transporting ATPase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C2MNK6
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:663 → 1312
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    4. XM_003503298.5 → XP_003503346.1  copper-transporting ATPase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C2MNK6
      Conserved Domains (4) summary
      COG2217
      Location:577 → 1361
      ZntA; Cation transport ATPase [Inorganic ion transport and metabolism]
      COG4087
      Location:1196 → 1315
      COG4087; Soluble P-type ATPase [General function prediction only]
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      pfam00122
      Location:780 → 1027
      E1-E2_ATPase; E1-E2 ATPase

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NW_023276807.1 Alternate CriGri-PICRH-1.0

      Range
      61588781..61666159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035452194.1 → XP_035308085.1  copper-transporting ATPase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8C2MNK6, A0A9J7HDA5
      Related
      ENSCGRP00015039451.1, ENSCGRT00015052244.1
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:663 → 1312
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    2. XM_035452195.1 → XP_035308086.1  copper-transporting ATPase 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C2MNK6, A0A9J7HCG1
      Related
      ENSCGRP00015046123.1, ENSCGRT00015080705.1
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:579 → 1276
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    3. XM_035452196.1 → XP_035308087.1  copper-transporting ATPase 2 isoform X4

      UniProtKB/TrEMBL
      A0A8C2MNK6, A0A9J7HA86
      Conserved Domains (3) summary
      cd00371
      Location:156 → 219
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
      cd02094
      Location:581 → 1222
      P-type_ATPase_Cu-like; P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
      NF033556
      Location:361 → 434
      MerTP_fusion; mercuric transport protein MerTP

    4. XM_027395233.2 → XP_027251034.1  copper-transporting ATPase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C2MNK6, A0A9J7F5J5
      Related
      ENSCGRP00015049424.1, ENSCGRT00015052092.1
    Nucleotide Protein Strain
    Heading Accession and Version

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