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    LOC100836570 peroxisome biogenesis protein 16 [ Brachypodium distachyon (stiff brome) ]

    Gene ID: 100836570, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC100836570
    Gene description
    peroxisome biogenesis protein 16
    Locus tag
    BRADI_3g02320v3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brachypodium distachyon
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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    Genomic context

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    See LOC100836570 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (1398225..1401581)
    102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (1386440..1389945)

    Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene putrescine hydroxycinnamoyltransferase 3 Neighboring gene uncharacterized LOC112271901 Neighboring gene uncharacterized LOC100838920 Neighboring gene NADP-dependent D-sorbitol-6-phosphate dehydrogenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in peroxisome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome biogenesis protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Genomic

    1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

      Range
      1398225..1401581
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003573669.3 → XP_003573717.1  peroxisome biogenesis protein 16

      UniProtKB/TrEMBL
      I1HWN1
      Conserved Domains (1) summary
      pfam08610
      Location:4 → 364
      Pex16; Peroxisomal membrane protein (Pex16)
    Nucleotide Protein Strain
    Heading Accession and Version

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