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    CYYR1-AS1 CYYR1 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100996571, updated on 10-Oct-2023

    Summary

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    Official Symbol
    CYYR1-AS1provided by HGNC
    Official Full Name
    CYYR1 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39560
    See related
    Ensembl:ENSG00000197934 MIM:616021; AllianceGenome:HGNC:39560
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See CYYR1-AS1 in Genome Data Viewer
    Location:
    21q21.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (26393635..26569252)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (24751751..24927395)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (27765954..27941571)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 926, pseudogene Neighboring gene APP divergent transcript Neighboring gene myristoylated alanine rich protein kinase C substrate pseudogene 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:27653974-27654905 Neighboring gene OCT4 hESC enhancer GRCh37_chr21:27683542-27684254 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:27761856-27763055 Neighboring gene uncharacterized LOC105372758 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:27813209-27814408 Neighboring gene uncharacterized LOC107985474 Neighboring gene cysteine and tyrosine rich 1 Neighboring gene NANOG hESC enhancer GRCh37_chr21:28191085-28191706 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:28214275-28215474 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:28217912-28218512 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:28218513-28219112 Neighboring gene NANOG hESC enhancer GRCh37_chr21:28224660-28225227 Neighboring gene uncharacterized LOC105372760 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 1 Neighboring gene NANOG hESC enhancer GRCh37_chr21:28282232-28282780

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Characterization of human gene locus CYYR1: a complex multi-transcript system. Casadei R, et al. Mol Biol Rep, 2014 Sep. PMID 24981926

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • cysteine and tyrosine rich 1 antisense RNA 1
    • cysteine/tyrosine-rich 1 antisense RNA 1

    Clone Names

    • AP001597.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135515.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001596, AP001597
      Related
      ENST00000357401.3

    2. NR_135516.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX114294
      Related
      ENST00000414486.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      26393635..26569252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      24751751..24927395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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