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    IRX6 iroquois homeobox 6 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

    Gene ID: 101041897, updated on 8-Mar-2024

    Summary

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    Gene symbol
    IRX6
    Gene description
    iroquois homeobox 6
    See related
    EnsemblRapid:ENSSBOG00000035547
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saimiri boliviensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
    Orthologs
    human mouse all
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    Genomic context

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    See IRX6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100918.1 (31442859..31449586)

    NW_024100918.1Genomic Context describing neighboring genes Neighboring gene taperin-like Neighboring gene iroquois homeobox 5 Neighboring gene uncharacterized LOC104652806 Neighboring gene matrix metallopeptidase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024100918 Unplaced Scaffold Reference BCM_Sbol_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    iroquois-class homeodomain protein IRX-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Sbol_2.0 Primary Assembly

    Genomic

    1. NW_024100918.1 Reference BCM_Sbol_2.0 Primary Assembly

      Range
      31442859..31449586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010347849.2 → XP_010346151.1  iroquois-class homeodomain protein IRX-6 isoform X3

      UniProtKB/TrEMBL
      A0A2K6V4A1
      Related
      ENSSBOP00000038991.1, ENSSBOT00000055950.2
      Conserved Domains (1) summary
      pfam05920
      Location:164 → 203
      Homeobox_KN; Homeobox KN domain

    2. XM_039464034.1 → XP_039319968.1  iroquois-class homeodomain protein IRX-6 isoform X2

      Conserved Domains (2) summary
      COG5576
      Location:145 → 229
      COG5576; Homeodomain-containing transcription factor [Transcription]
      pfam05920
      Location:164 → 203
      Homeobox_KN; Homeobox KN domain

    3. XM_039464031.1 → XP_039319965.1  iroquois-class homeodomain protein IRX-6 isoform X1

      Conserved Domains (1) summary
      pfam05920
      Location:164 → 203
      Homeobox_KN; Homeobox KN domain

    4. XM_003937276.3 → XP_003937325.1  iroquois-class homeodomain protein IRX-6 isoform X4

      Conserved Domains (1) summary
      pfam05920
      Location:164 → 203
      Homeobox_KN; Homeobox KN domain
    Nucleotide Protein
    Heading Accession and Version

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