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    spats2 spermatogenesis associated serine rich 2 [ Oryzias latipes (Japanese medaka) ]

    Gene ID: 101156818, updated on 8-Mar-2024

    Summary

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    Gene symbol
    spats2
    Gene description
    spermatogenesis associated serine rich 2
    See related
    EnsemblRapid:ENSORLG00000015146
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryzias latipes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
    Orthologs
    zebrafish all
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    Genomic context

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    See spats2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current ASM223467v1 (GCF_002234675.1) 7 NC_019865.2 (22066619..22083878)
    102 previous assembly ASM31367v1 (GCF_000313675.1) 7 NC_019865.1 (22375889..22390422)

    Chromosome 7 - NC_019865.2Genomic Context describing neighboring genes Neighboring gene matrix metalloproteinase-19-like Neighboring gene PYM homolog 1, exon junction complex associated factor Neighboring gene poly(A) specific ribonuclease subunit PAN2 Neighboring gene ORMDL sphingolipid biosynthesis regulator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spermatogenesis-associated serine-rich protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM223467v1 Primary Assembly

    Genomic

    1. NC_019865.2 Reference ASM223467v1 Primary Assembly

      Range
      22066619..22083878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011477528.2 → XP_011475830.1  spermatogenesis-associated serine-rich protein 2 isoform X1

      See identical proteins and their annotated locations for XP_011475830.1

      UniProtKB/TrEMBL
      A0A3P9H9K3, H2MJX5
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 365
      DUF1387; Protein of unknown function (DUF1387)

    2. XM_020704858.2 → XP_020560517.1  spermatogenesis-associated serine-rich protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A3P9H9K3
      Related
      ENSORLP00000069898.1, ENSORLT00000092094.1
      Conserved Domains (2) summary
      pfam07139
      Location:61 → 345
      DUF1387; Protein of unknown function (DUF1387)
      cl21463
      Location:13 → 52
      UBA_like_SF; UBA domain-like superfamily

    3. XM_004070973.4 → XP_004071021.1  spermatogenesis-associated serine-rich protein 2 isoform X1

      See identical proteins and their annotated locations for XP_004071021.1

      UniProtKB/TrEMBL
      A0A3P9H9K3, H2MJX5
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 365
      DUF1387; Protein of unknown function (DUF1387)

    4. XM_020704857.2 → XP_020560516.1  spermatogenesis-associated serine-rich protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A3P9H9K3, H2MJX5
      Related
      ENSORLP00000018977.2, ENSORLT00000018978.3
      Conserved Domains (1) summary
      pfam07139
      Location:81 → 365
      DUF1387; Protein of unknown function (DUF1387)
    Nucleotide Protein
    Heading Accession and Version

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