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    ERAF17 truncated transcription factor CAULIFLOWER D [ Cucumis sativus (cucumber) ]

    Gene ID: 101222812, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ERAF17
    Gene description
    truncated transcription factor CAULIFLOWER D
    Locus tag
    Csa_013390
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    cus3
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    Genomic context

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    See ERAF17 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (6027345..6030447)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (5994345..5998235)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplastic Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene squamosa promoter-binding-like protein 13A Neighboring gene SUMO-activating enzyme subunit 1B-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation of a MADS-box gene (ERAF17) and correlation of its expression with the induction of formation of female flowers by ethylene in cucumber plants (Cucumis sativus L.). Ando S, et al. Planta, 2001 Oct. PMID 11722131
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    truncated transcription factor CAULIFLOWER D
    Names
    putative MADS-box protein
    putative transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305753.1 → NP_001292682.1  truncated transcription factor CAULIFLOWER D

      Status: PROVISIONAL

      Source sequence(s)
      AB046596

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      6027345..6030447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004145102.3 → XP_004145150.1  truncated transcription factor CAULIFLOWER D

      UniProtKB/TrEMBL
      Q9AYR8
      Conserved Domains (2) summary
      cd00265
      Location:2 → 72
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:87 → 169
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases