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    bco2a beta-carotene oxygenase 2a [ Salmo salar (Atlantic salmon) ]

    Gene ID: 101448036, updated on 20-Apr-2024

    Summary

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    Gene symbol
    bco2a
    Gene description
    beta-carotene oxygenase 2a
    See related
    Ensembl:ENSSSAG00000068012
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmo salar
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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    Genomic context

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    See bco2a in Genome Data Viewer
    Location:
    chromosome: ssa20
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (57978738..57984198, complement)
    100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (52070970..52076430, complement)

    Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106580953 Neighboring gene uncharacterized LOC123723995 Neighboring gene Interleukin-18 Neighboring gene succinate dehydrogenase complex, subunit D, integral membrane protein b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-carotene 15,15'-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carotenoid dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carotene catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retinal metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-carotene oxygenase 2a
    NP_001266006.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001279077.1 → NP_001266006.1  beta-carotene oxygenase 2a

      See identical proteins and their annotated locations for NP_001266006.1

      Status: PROVISIONAL

      Source sequence(s)
      HF543834
      UniProtKB/TrEMBL
      A0A1S3SY50, K8DW93
      Related
      ENSSSAP00000084029.1, ENSSSAT00000117839.2
      Conserved Domains (1) summary
      pfam03055
      Location:35 → 548
      RPE65; Retinal pigment epithelial membrane protein

    RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ssal_v3.1

    Genomic

    1. NC_059461.1 Reference Ssal_v3.1

      Range
      57978738..57984198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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