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    RAG1 recombination activating 1 [ Condylura cristata (star-nosed mole) ]

    Gene ID: 101621180, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RAG1
    Gene description
    recombination activating 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Condylura cristata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Talpidae; Condylura
    Orthologs
    human mouse all
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    Genomic context

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    See RAG1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current ConCri1.0 (GCF_000260355.1) Unplaced Scaffold NW_004567116.1 (15094646..15097774, complement)

    NW_004567116.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport associated protein Neighboring gene recombination activating 2 Neighboring gene TNF receptor associated factor 6 Neighboring gene proline rich 5 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004567116.1 Unplaced Scaffold Reference ConCri1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Condylura cristata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ConCri1.0

    Genomic

    1. NW_004567116.1 Reference ConCri1.0

      Range
      15094646..15097774 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004682904.1 → XP_004682961.1  V(D)J recombination-activating protein 1

      Conserved Domains (4) summary
      pfam00097
      Location:292 → 330
      zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
      pfam10426
      Location:353 → 381
      zf-RAG1; Recombination-activating protein 1 zinc-finger domain
      pfam12560
      Location:11 → 290
      RAG1_imp_bd; RAG1 importin binding
      pfam12940
      Location:383 → 1038
      RAG1; Recombination-activation protein 1 (RAG1)
    Nucleotide Protein
    Heading Accession and Version

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