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    RAG1 recombination activating 1 [ Echinops telfairi (small Madagascar hedgehog) ]

    Gene ID: 101659128, updated on 20-Sep-2024

    Summary

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    Gene symbol
    RAG1
    Gene description
    recombination activating 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Echinops telfairi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Tenrecidae; Tenrecinae; Echinops
    Orthologs
    human mouse all
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    Genomic context

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    See RAG1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103 current ASM31398v2 (GCF_000313985.2) Unplaced Scaffold NW_022103958.1 (15058798..15061923, complement)
    101 previous assembly EchTel2.0 (GCF_000313985.1) Unplaced Scaffold NW_004558732.1 (14050931..14054050)

    NW_022103958.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport associated protein Neighboring gene small nucleolar RNA SNORA25 Neighboring gene recombination activating 2 Neighboring gene TNF receptor associated factor 6 Neighboring gene proline rich 5 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in V(D)J recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in adaptive immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pre-B cell allelic exclusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of endodeoxyribonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    V(D)J recombination-activating protein 1
    Names
    recombination activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Echinops telfairi Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM31398v2 Primary Assembly

    Genomic

    1. NW_022103958.1 Reference ASM31398v2 Primary Assembly

      Range
      15058798..15061923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004708303.3 → XP_004708360.1  V(D)J recombination-activating protein 1

      Conserved Domains (4) summary
      pfam10426
      Location:349 → 378
      zf-RAG1; Recombination-activating protein 1 zinc-finger domain
      pfam12940
      Location:384 → 1035
      RAG1; Recombination-activation protein 1 (RAG1), recombinase
      cd16530
      Location:284 → 329
      RING-HC_RAG1; RING finger, HC subclass, found in recombination activating gene-1 (RAG-1) and similar proteins
      pfam12560
      Location:7 → 286
      RAG1_imp_bd; RAG1 importin binding
    Nucleotide Protein
    Heading Accession and Version

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