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    nectin4 nectin cell adhesion molecule 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101734085, updated on 10-Oct-2024

    Summary

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    Official Symbol
    nectin4provided by Xenbase
    Official Full Name
    nectin cell adhesion molecule 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6453729
    See related
    Ensembl:ENSXETG00000047220
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    lnir; prr4; pvrl4; nectin-4
    Orthologs
    human mouse all
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    Genomic context

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    See nectin4 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (146897748..146942525, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016687941.1 (1060..4185)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116406919 Neighboring gene upstream transcription factor 1 Neighboring gene Rho GTPase activating protein 30 Neighboring gene lens fiber membrane intrinsic protein Neighboring gene ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nectin-4
    Names
    Poliovirus receptor-related protein 4
    poliovirus receptor-related 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433001.1 → NP_001419930.1  nectin-4 precursor

      Status: VALIDATED

      Source sequence(s)
      AAMC04000008
      UniProtKB/TrEMBL
      A0A8J1INS9

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      146897748..146942525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031891383.1 → XP_031747243.1  nectin-4

      Related
      ENSXETP00000106565.1, ENSXETT00000116800.1
      Conserved Domains (4) summary
      cd00096
      Location:252 → 257
      Ig; Ig strand A [structural motif]
      cd05888
      Location:44 → 151
      IgV_1_Nectin-4_like; First immunoglobulin (Ig) domain of nectin-4, and similar domains
      cd07704
      Location:166 → 247
      IgC1_2_Nectin-3-4_like; Second immunoglobulin (Ig) domain of nectin-3 and nectin-4 (poliovirus receptor related protein 4), and similar domains; member of the C1-set of Ig superfamily (IgSF) domains
      cl11960
      Location:252 → 336
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5FWR8.2 GenPept UniProtKB/Swiss-Prot:Q5FWR8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.