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    LINC01961 long intergenic non-protein coding RNA 1961 [ Homo sapiens (human) ]

    Gene ID: 101927424, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01961provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1961provided by HGNC
    Primary source
    HGNC:HGNC:52786
    See related
    Ensembl:ENSG00000234148 AllianceGenome:HGNC:52786
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.5), spleen (RPKM 0.5) and 1 other tissue See more
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    Genomic context

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    See LINC01961 in Genome Data Viewer
    Location:
    2q14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (113512124..113515294)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (113936655..113939825)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (114269701..114272871)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16421 Neighboring gene Zn regulated GTPase metalloprotein activator 1B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114257455-114257992 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:114257993-114258528 Neighboring gene forkhead box D4 like 1 Neighboring gene PGM5P4 antisense RNA 1 Neighboring gene EZH inhibitory protein-like Neighboring gene phosphoglucomutase 5 pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:114328102-114328641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:114334474-114334974 Neighboring gene uncharacterized LOC124907875 Neighboring gene family with sequence similarity 138 member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diverse fates of paralogs following segmental duplication of telomeric genes. Wong A, et al. Genomics, 2004 Aug. PMID 15233989

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187131.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078621
      Related
      ENST00000671438.1

    2. NR_187132.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078621

    3. NR_187133.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078621

    4. NR_187134.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL078621
      Related
      ENST00000668674.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      113512124..113515294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      113936655..113939825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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