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    LOC101928636 uncharacterized LOC101928636 [ Homo sapiens (human) ]

    Gene ID: 101928636, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC101928636
    Gene description
    uncharacterized LOC101928636
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101928636 in Genome Data Viewer
    Location:
    3p21.31
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (45201829..45216774)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (45218173..45233133)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906233 Neighboring gene CUB domain containing protein 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:45165469-45165970 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:45165971-45166470 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:45169788-45170032 Neighboring gene Sharpr-MPRA regulatory region 12576 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:45207705-45208668 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:45208669-45209632 Neighboring gene ribosomal protein S24 pseudogene 8 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:45240939-45242138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45256576-45257076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45257077-45257577 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14280 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14281 Neighboring gene transmembrane protein 158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:45281831-45282331 Neighboring gene small nucleolar RNA U3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      45201829..45216774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001740675.2 RNA Sequence

    2. XR_001740674.2 RNA Sequence

    3. XR_001740676.2 RNA Sequence

    4. XR_007095899.1 RNA Sequence

    5. XR_001740677.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      45218173..45233133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007073480.1 RNA Sequence

    2. XR_007073481.1 RNA Sequence

    3. XR_007073483.1 RNA Sequence

    4. XR_007073484.1 RNA Sequence

    5. XR_007073482.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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