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    LINC02443 long intergenic non-protein coding RNA 2443 [ Homo sapiens (human) ]

    Gene ID: 101929584, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02443provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2443provided by HGNC
    Primary source
    HGNC:HGNC:53375
    See related
    Ensembl:ENSG00000256115 AllianceGenome:HGNC:53375
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.4) See more
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    Genomic context

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    See LINC02443 in Genome Data Viewer
    Location:
    12p13.32
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (5233996..5243151, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (5240157..5249330, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (5343162..5352317, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369617 Neighboring gene uncharacterized LOC124902864 Neighboring gene uncharacterized LOC105369616 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr12:5330975-5331795 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:5341834-5342334 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:5342335-5342835 Neighboring gene Sharpr-MPRA regulatory region 8722 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:5355081-5355848 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:5377405-5378062 Neighboring gene 12p13 proximal LINE-mediated recombination region Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5399277-5399846 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5399847-5400415 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:5497373-5498572 Neighboring gene uncharacterized LOC105369618 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:5542091-5542616 Neighboring gene neurotrophin 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120476.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC006206
      Related
      ENST00000790138.1

    2. NR_120477.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two 3' exons and its 3' terminal exon extends past a splice site used in variant 1, resulting in a shorter transcript.
      Source sequence(s)
      BC031884
      Related
      ENST00000660094.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      5233996..5243151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      5240157..5249330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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