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    Mepe matrix extracellular phosphoglycoprotein [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

    Gene ID: 101954515, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Mepe
    Gene description
    matrix extracellular phosphoglycoprotein
    Locus tag
    H1C71_036860
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ictidomys tridecemlineatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
    Orthologs
    human mouse all
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    Genomic context

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    See Mepe in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024405285.1 (1864923..1877532, complement)
    102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936905.1 (284849..297297, complement)

    NW_024405285.1Genomic Context describing neighboring genes Neighboring gene secreted phosphoprotein 1 Neighboring gene ribulose-phosphate 3-epimerase-like Neighboring gene integrin binding sialoprotein Neighboring gene dentin matrix acidic phosphoprotein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biomineral tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    matrix extracellular phosphoglycoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HiC_Itri_2 Primary Assembly

    Genomic

    1. NW_024405285.1 Reference HiC_Itri_2 Primary Assembly

      Range
      1864923..1877532 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005341897.3 → XP_005341954.1  matrix extracellular phosphoglycoprotein

      UniProtKB/TrEMBL
      D6C6P5
      Conserved Domains (1) summary
      pfam07175
      Location:126 → 289
      Osteoregulin
    Nucleotide Protein
    Heading Accession and Version

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