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    LOC102043041 rap1 GTPase-activating protein 1 [ Geospiza fortis (medium ground-finch) ]

    Gene ID: 102043041, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC102043041
    Gene description
    rap1 GTPase-activating protein 1
    See related
    Ensembl:ENSGFOG00000003754
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geospiza fortis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
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    Genomic context

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    See LOC102043041 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054589.1 (267693..311594, complement)

    NW_005054589.1Genomic Context describing neighboring genes Neighboring gene antigen WC1.1-like Neighboring gene glutathione S-transferase kappa 1 Neighboring gene transmembrane protein 139 Neighboring gene caspase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005054589 Unplaced Scaffold Reference GeoFor_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of small GTPase mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rap1 GTPase-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GeoFor_1.0

    Genomic

    1. NW_005054589.1 Reference GeoFor_1.0

      Range
      267693..311594 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031064423.1 → XP_030920283.1  rap1 GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8N5EZL6
      Related
      ENSGFOP00000005290.1, ENSGFOT00000005437.1
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    2. XM_031064419.1 → XP_030920279.1  rap1 GTPase-activating protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8N5EYH9
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    3. XM_031064418.1 → XP_030920278.1  rap1 GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8N5EZL6
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    4. XM_031064420.1 → XP_030920280.1  rap1 GTPase-activating protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8N5F4Q9
      Related
      ENSGFOP00000005319.1, ENSGFOT00000005466.1
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    5. XM_031064421.1 → XP_030920281.1  rap1 GTPase-activating protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8N5F3C4
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    6. XM_031064422.1 → XP_030920282.1  rap1 GTPase-activating protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8N5F0Z6
      Conserved Domains (2) summary
      pfam02145
      Location:213 → 392
      Rap_GAP; Rap/ran-GAP
      pfam02188
      Location:1 → 17
      GoLoco; GoLoco motif

    RNA

    1. XR_004082646.1 RNA Sequence

    2. XR_004082645.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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