U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TBXT T-box transcription factor T [ Zonotrichia albicollis (white-throated sparrow) ]

    Gene ID: 102072654, updated on 3-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TBXT
    Gene description
    T-box transcription factor T
    See related
    Ensembl:ENSZALG00000016330
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zonotrichia albicollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TBXT in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081574.1 (1257638..1265694)

    NW_005081574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102072471 Neighboring gene uncharacterized LOC113459204 Neighboring gene phosphodiesterase 10A Neighboring gene uncharacterized LOC102066848

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_005081574 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mesoderm formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in somitogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    T-box transcription factor T
    Names
    T brachyury transcription factor
    T, brachyury homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zonotrichia_albicollis-1.0.1

    Genomic

    1. NW_005081574.1 Reference Zonotrichia_albicollis-1.0.1

      Range
      1257638..1265694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014266632.2 → XP_014122107.1  T-box transcription factor T isoform X1

      UniProtKB/TrEMBL
      D8KW42, D8KWF8
      Related
      ENSZALP00000020788.1, ENSZALT00000027181.1
      Conserved Domains (1) summary
      cd00182
      Location:42 → 223
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

    2. XM_014266633.2 → XP_014122108.1  T-box transcription factor T isoform X2

      UniProtKB/TrEMBL
      D8KWF8
      Conserved Domains (1) summary
      cd00182
      Location:42 → 223
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases